Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_AFF1_0004300 Exon-Exon chr4:87967318-88057618 chr4:87046166-87136466 250 nt 0.4160
hsa_AFF1_0005400 Exon-Exon chr4:87967318-88061059 chr4:87046166-87139907 127 nt 0.4409
hsa_AFF1_0005500 Exon-Exon chr4:87967336-87968746 chr4:87046184-87047594 1003 nt 0.5115
hsa_chr4_0621300 Intergenic-Intergenic chr4:87968535-87968729 chr4:87047383-87047577 195 nt 0.5282
hsa_chr4_0621400 Intergenic-Intergenic chr4:87968535-87969193 chr4:87047383-87048041 659 nt 0.4234
hsa_chr4_0621500 Intergenic-Intergenic chr4:87968671-88011181 chr4:87047519-87090029 122 nt 0.4672
hsa_chr4_0621600 Intergenic-Intergenic chr4:87972869-87973297 chr4:87051717-87052145 429 nt 0.4662
hsa_AFF1_0005800 Intron-Intron chr4:87973871-87974181 chr4:87052719-87053029 311 nt 0.4598
hsa_chr4_0621700 Intergenic-Intergenic chr4:87975876-87976893 chr4:87054724-87055741 1018 nt 0.4106
hsa_AFF1_0005900 Intron-Intron chr4:87978287-87978534 chr4:87057135-87057382 248 nt 0.4597
Showing 91 to 100 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].