Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_AFF1_0008200 Exon-Exon chr4:88005275-88047488 chr4:87084123-87126336 42 nt 0.4048
hsa_AFF1_0007500 Exon-Exon chr4:88005275-88061059 chr4:87084123-87139907 250 nt 0.3400
hsa_chr4_0622000 Intergenic-Intergenic chr4:88009069-88009247 chr4:87087917-87088095 179 nt 0.3017
hsa_AFF1_0008400 Intron-Exon-Intron chr4:88010689-88011222 chr4:87089537-87090070 241 nt 0.4647
hsa_AFF1_0008500 Intron-Exon-Intron chr4:88010689-88012981 chr4:87089537-87091829 43 nt 0.4186
hsa_AFF1_0008600 Intron-Exon-Intron chr4:88010689-88016121 chr4:87089537-87094969 333 nt 0.4414
hsa_AFF1_0008300 Intron-Exon-Intron chr4:88010689-88026997 chr4:87089537-87105845 719 nt 0.3964
hsa_AFF1_0008700 Intron-Exon-Intron chr4:88010697-88016121 chr4:87089545-87094969 238 nt 0.4286
hsa_AFF1_0008800 Intron-Exon-Intron chr4:88010733-88011222 chr4:87089581-87090070 87 nt 0.4828
hsa_AFF1_0009000 Exon-Exon chr4:88011136-88012981 chr4:87089984-87091829 124 nt 0.4677
Showing 121 to 130 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].