Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_AFF1_0009100 Exon-Exon chr4:88011136-88016121 chr4:87089984-87094969 179 nt 0.4302
hsa_AFF1_0009200 Exon-Exon chr4:88011136-88026997 chr4:87089984-87105845 272 nt 0.4706
hsa_AFF1_0009300 Exon-Exon chr4:88011136-88029467 chr4:87089984-87108315 179 nt 0.4302
hsa_AFF1_0009400 Exon-Exon chr4:88011136-88036451 chr4:87089984-87115299 207 nt 0.5314
hsa_AFF1_0009500 Exon-Exon chr4:88011136-88053560 chr4:87089984-87132408 347 nt 0.4207
hsa_chr4_0622100 Intergenic-Intergenic chr4:88012430-88016393 chr4:87091278-87095241 879 nt 0.3675
hsa_AFF1_0009600 Intron-Exon-Intron chr4:88012485-88016315 chr4:87091333-87095163 746 nt 0.3284
hsa_AFF1_0009700 Intron-Exon-Intron chr4:88012489-88016315 chr4:87091337-87095163 249 nt 0.3373
hsa_AFF1_0009900 Exon-Exon chr4:88012945-88029467 chr4:87091793-87108315 43 nt 0.4884
hsa_AFF1_0010000 Exon-Exon chr4:88012945-88036451 chr4:87091793-87115299 191 nt 0.4607
Showing 131 to 140 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].