Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_AFF1_0003800 Intron-Intron chr4:87957341-87958856 chr4:87036189-87037704 1516 nt 0.4228
hsa_AFF1_0003900 Intron-Intron chr4:87959062-87960276 chr4:87037910-87039124 1215 nt 0.3918
hsa_chr4_0621100 Intergenic-Intergenic chr4:87959740-87960316 chr4:87038588-87039164 577 nt 0.4506
hsa_chr4_0621200 Intergenic-Intergenic chr4:87962260-87962913 chr4:87041108-87041761 654 nt 0.4343
hsa_AFF1_0004400 Intron-Exon chr4:87967318-87968826 chr4:87046166-87047674 127 nt 0.4646
hsa_AFF1_0004500 Intron-Exon chr4:87967318-87968834 chr4:87046166-87047682 1109 nt 0.5068
hsa_AFF1_0004600 Intron-Exon-Intron chr4:87967318-87970914 chr4:87046166-87049762 407 nt 0.4889
hsa_AFF1_0004700 Intron-Exon-Intron chr4:87967318-87988343 chr4:87046166-87067191 121 nt 0.4545
hsa_AFF1_0004800 Intron-Exon-Intron chr4:87967318-87990321 chr4:87046166-87069169 127 nt 0.4488
hsa_AFF1_0004900 Exon-Exon chr4:87967318-88005316 chr4:87046166-87084164 285 nt 0.4386
Showing 251 to 260 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].