Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_AFF1_0009600 Intron-Exon-Intron chr4:88012485-88016315 chr4:87091333-87095163 746 nt 0.3284
hsa_AFF1_0009700 Intron-Exon-Intron chr4:88012489-88016315 chr4:87091337-87095163 249 nt 0.3373
hsa_AFF1_0009900 Exon-Exon chr4:88012945-88029467 chr4:87091793-87108315 43 nt 0.4884
hsa_AFF1_0010000 Exon-Exon chr4:88012945-88036451 chr4:87091793-87115299 191 nt 0.4607
hsa_AFF1_0010100 Exon-Exon chr4:88012945-88053560 chr4:87091793-87132408 92 nt 0.3804
hsa_chr4_0622200 Intergenic-Intergenic chr4:88013191-88044294 chr4:87092039-87123142 250 nt 0.3600
hsa_AFF1_0010200 Exon-Exon chr4:88016067-88026834 chr4:87094915-87105682 110 nt 0.4273
hsa_AFF1_0010300 Exon-Exon chr4:88016067-88029467 chr4:87094915-87108315 305 nt 0.5082
hsa_AFF1_0010400 Exon-Exon chr4:88016067-88036451 chr4:87094915-87115299 61 nt 0.3443
hsa_chr4_0622300 Intergenic-Intergenic chr4:88023624-88023809 chr4:87102472-87102657 186 nt 0.4462
Showing 311 to 320 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].