Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_AFF1_0012500 Intron-Exon-Intron chr4:88033504-88053016 chr4:87112352-87131864 78 nt 0.4103
hsa_AFF1_0012800 Intron-Exon-Intron chr4:88035519-88039487 chr4:87114367-87118335 145 nt 0.3655
hsa_AFF1_0012900 Exon-Exon chr4:88035519-88048269 chr4:87114367-87127117 92 nt 0.4457
hsa_AFF1_0013000 Exon-Exon chr4:88035519-88048855 chr4:87114367-87127703 153 nt 0.4379
hsa_AFF1_0013100 Exon-Exon chr4:88035519-88053016 chr4:87114367-87131864 190 nt 0.5263
hsa_AFF1_0013200 Exon-Exon chr4:88035519-88053560 chr4:87114367-87132408 1775 nt 0.5414
hsa_AFF1_0012700 Exon-Exon chr4:88035519-88061059 chr4:87114367-87139907 250 nt 0.4040
hsa_AFF1_0013300 Exon-Exon chr4:88035939-88036292 chr4:87114787-87115140 354 nt 0.6215
hsa_AFF1_0013400 Exon-Exon chr4:88036050-88046295 chr4:87114898-87125143 509 nt 0.5501
hsa_chr4_0622400 Intergenic-Intergenic chr4:88041860-88059837 chr4:87120708-87138685 250 nt 0.3160
Showing 341 to 350 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].