Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_chr4_0622600 Intergenic-Intergenic chr4:88048682-88052406 chr4:87127530-87131254 346 nt 0.4538
hsa_AFF1_0014400 Exon-Exon chr4:88048795-88053560 chr4:87127643-87132408 199 nt 0.4221
hsa_AFF1_0014500 Intron-Exon-Intron chr4:88048951-88052371 chr4:87127799-87131219 137 nt 0.4599
hsa_AFF1_0014600 Exon-Exon chr4:88052235-88053016 chr4:87131083-87131864 209 nt 0.4211
hsa_AFF1_0014700 Exon-Exon chr4:88052945-88055846 chr4:87131793-87134694 78 nt 0.3333
hsa_AFF1_0014900 Exon-Exon chr4:88053423-88059120 chr4:87132271-87137968 212 nt 0.4953
hsa_chr4_0622700 Intergenic-Intergenic chr4:88053542-88056848 chr4:87132390-87135696 359 nt 0.5292
hsa_AFF1_0015000 Intron-Intron chr4:88054126-88054353 chr4:87132974-87133201 228 nt 0.4254
hsa_chr4_0622800 Intergenic-Intergenic chr4:88054954-88055791 chr4:87133802-87134639 838 nt 0.4463
hsa_AFF1_0015100 Intron-Intron chr4:88055214-88055511 chr4:87134062-87134359 298 nt 0.4295
Showing 361 to 370 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].