Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_AFF1_0000300 Exon-Exon chr4:87869650-88053560 chr4:86948498-87132408 250 nt 0.3320
hsa_AFF1_0001100 Exon-Exon chr4:87869650-88061059 chr4:86948498-87139907 195 nt 0.4462
hsa_AFF1_0001200 Intron-Intron chr4:87872869-87873555 chr4:86951717-86952403 687 nt 0.3741
hsa_chr4_0620000 Intergenic-Intergenic chr4:87878943-87884064 chr4:86957791-86962912 250 nt 0.3360
hsa_chr4_0620100 Intergenic-Intergenic chr4:87878983-87931954 chr4:86957831-87010802 250 nt 0.3120
hsa_AFF1_0001300 Intron-Intron chr4:87885797-87890817 chr4:86964645-86969665 250 nt 0.4480
hsa_AFF1_0001400 Intron-Intron chr4:87885797-87904466 chr4:86964645-86983314 250 nt 0.4320
hsa_AFF1_0001500 Intron-Exon-Intron chr4:87890539-88002408 chr4:86969387-87081256 250 nt 0.4040
hsa_chr4_0620200 Intergenic-Intergenic chr4:87891471-87905913 chr4:86970319-86984761 250 nt 0.3520
hsa_AFF1_0001600 Intron-Intron chr4:87894505-87894664 chr4:86973353-86973512 160 nt 0.3813
Showing 41 to 50 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].