Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_chr4_0620300 Intergenic-Intergenic chr4:87900482-87903760 chr4:86979330-86982608 250 nt 0.4400
hsa_chr4_0620400 Intergenic-Intergenic chr4:87901357-87901939 chr4:86980205-86980787 583 nt 0.3585
hsa_AFF1_0001700 Intron-Intron chr4:87902296-87905055 chr4:86981144-86983903 2760 nt 0.4442
hsa_AFF1_0001800 Intron-Intron chr4:87905175-87905497 chr4:86984023-86984345 323 nt 0.2941
hsa_AFF1_0001900 Intron-Intron chr4:87906699-87907333 chr4:86985547-86986181 635 nt 0.3386
hsa_AFF1_0002000 Intron-Intron chr4:87906901-87907114 chr4:86985749-86985962 214 nt 0.2570
hsa_chr4_0620500 Intergenic-Intergenic chr4:87923537-87931954 chr4:87002385-87010802 250 nt 0.3000
hsa_AFF1_0002100 Intron-Intron chr4:87923839-87924622 chr4:87002687-87003470 784 nt 0.4031
hsa_AFF1_0002200 Intron-Intron chr4:87925012-87925923 chr4:87003860-87004771 912 nt 0.3202
hsa_AFF1_0002300 Intron-Intron chr4:87926409-87931963 chr4:87005257-87010811 250 nt 0.3320
Showing 51 to 60 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].