Basic Information

Symbol
circAFF1
RNA Class
circRNA
Alias
ALF Transcription Elongation Factor 1 AF4 FEL AF4/FMR2 Family Member 1 MLLT2 PBM1 ALL1-Fused Gene From Chromosome 4 Protein Pre-B-Cell Monocytic Leukemia Partner 1 Proto-Oncogene AF4 AF-4 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax (Drosophila) Homolog); Translocated To, 2 Myeloid/Lymphoid Or Mixed-Lineage Leukemia (Trithorax Homolog, Drosophila); Translocated To, 2 ALL1-Fused Gene From Chromosome 4 AF4/FMR2 Family, Member 1 KMT2A/AFF1 Fusion Protein Protein AF-4 Protein FEL
Location (GRCh37)
4:87869650-88061059 UCSC Genome Browser
Location (GRCh38)
4:86948498-87139907
UCSC Genome Browser Search in Marker Scope
Host gene
AFF1
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_AFF1_0003300 Intron-Exon chr4:87949663-87968834 chr4:87028511-87047682 250 nt 0.3280
hsa_chr4_0620900 Intergenic-Intergenic chr4:87950663-87950890 chr4:87029511-87029738 228 nt 0.4167
hsa_chr4_0621000 Intergenic-Intergenic chr4:87954041-87954433 chr4:87032889-87033281 393 nt 0.4478
hsa_AFF1_0003500 Intron-Intron chr4:87954206-87954890 chr4:87033054-87033738 685 nt 0.3971
hsa_AFF1_0003600 Intron-Intron chr4:87954801-87955229 chr4:87033649-87034077 429 nt 0.3776
hsa_AFF1_0003700 Intron-Intron chr4:87956621-87961816 chr4:87035469-87040664 250 nt 0.4240
hsa_AFF1_0003800 Intron-Intron chr4:87957341-87958856 chr4:87036189-87037704 1516 nt 0.4228
hsa_AFF1_0003900 Intron-Intron chr4:87959062-87960276 chr4:87037910-87039124 1215 nt 0.3918
hsa_chr4_0621100 Intergenic-Intergenic chr4:87959740-87960316 chr4:87038588-87039164 577 nt 0.4506
hsa_chr4_0621200 Intergenic-Intergenic chr4:87962260-87962913 chr4:87041108-87041761 654 nt 0.4343
Showing 71 to 80 of 380 entries
Forensic Context

A study in mice demonstrated that the circAFF1 serves as a stable reference gene for postmortem interval estimation in muscle tissue [Fanzhang Lei et al. DOI:10.1093/gpbjnl/qzag007].