Basic Information
Symbol
circLIN54
RNA Class
circRNA
Alias
Lin-54 DREAM MuvB Core Complex Component
CXCDC1
MIP120
JC8.6
TCX1
CXC Domain-Containing Protein 1
Protein Lin-54 Homolog
DKFZp686L1814
Lin-54 Homolog (C. Elegans)
CXC Domain Containing 1
Lin-54 Homolog
KIAA2037
Location (GRCh37)
4:83838097-83928847
UCSC Genome Browser
Location (GRCh38)
4:82916944-83007694
Host gene
LIN54
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
Transcripts
| ID | Type | Location (GRCh37) | Location (GRCh38) | Length | GC content |
|---|---|---|---|---|---|
| hsa_LIN54_0003000 | Exon-Exon | chr4:83860692-83900159 | chr4:82939539-82979006 | 415 nt | 0.4602 |
| hsa_LIN54_0003100 | Exon-Exon | chr4:83861042-83867627 | chr4:82939889-82946474 | 198 nt | 0.4141 |
| hsa_LIN54_0003200 | Exon-Exon | chr4:83861042-83891622 | chr4:82939889-82970469 | 291 nt | 0.4742 |
| hsa_LIN54_0003300 | Exon-Exon | chr4:83861042-83900159 | chr4:82939889-82979006 | 198 nt | 0.4444 |
| hsa_LIN54_0003400 | Intron-Exon-Intron | chr4:83864251-83867627 | chr4:82943098-82946474 | 346 nt | 0.4393 |
| hsa_LIN54_0003800 | Intron-Exon-Intron | chr4:83867411-83882471 | chr4:82946258-82961318 | 250 nt | 0.3320 |
| hsa_LIN54_0004000 | Intron-Exon-Intron | chr4:83867411-83882629 | chr4:82946258-82961476 | 304 nt | 0.4539 |
| hsa_LIN54_0003900 | Intron-Exon-Intron | chr4:83867411-83902628 | chr4:82946258-82981475 | 2953 nt | 0.3386 |
| hsa_LIN54_0004100 | Exon-Exon | chr4:83867411-83906029 | chr4:82946258-82984876 | 394 nt | 0.4695 |
| hsa_LIN54_0004200 | Intron-Intron | chr4:83867824-83868199 | chr4:82946671-82947046 | 376 nt | 0.3457 |
Showing 41 to 50 of 74 entries
Forensic Context
A study in mice demonstrated that the circLIN54 (circLin54) is significantly up-regulated in primary cortical neurons following methamphetamine treatment, with this expression change validated via high-throughput RNA sequencing and qRT-PCR [Li et al. DOI:10.1016/J.Neulet.2019.02.032].