Basic Information

Symbol
circOGDH
RNA Class
circRNA
Alias
Oxoglutarate Dehydrogenase OGDC-E1 OGDH2 KGD1 E1k Thiamine Diphosphate (ThDP)-Dependent 2-Oxoglutarate Dehydrogenase Oxoglutarate (Alpha-Ketoglutarate) Dehydrogenase (Lipoamide) 2-Oxoglutarate Dehydrogenase Complex Component E1 2-Oxoglutarate Dehydrogenase, Mitochondrial Alpha-KGDH-E1 EC 1.2.4.2 OGDH-E1 HsOGDH E1o Oxoglutarate Dehydrogenase (Succinyl-Transferring) Alpha-Ketoglutarate Dehydrogenase Testicular Tissue Protein Li 131 Oxoglutarate Decarboxylase AKGDH OGDHD OGDC
Location (GRCh37)
7:44654708-44748474 UCSC Genome Browser
Location (GRCh38)
7:44615109-44708875
UCSC Genome Browser Search in Marker Scope
Host gene
OGDH
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_OGDH_0000600 Exon-Exon chr7:44663916-44687133 chr7:44624317-44647534 532 nt 0.5019
hsa_OGDH_0000700 Exon-Exon chr7:44663916-44687358 chr7:44624317-44647759 544 nt 0.5239
hsa_OGDH_0001800 Exon-Exon chr7:44663916-44721447 chr7:44624317-44681848 1362 nt 0.5396
hsa_OGDH_0001900 Exon-Exon chr7:44663916-44741214 chr7:44624317-44701615 2659 nt 0.5517
hsa_OGDH_0002300 Intron-Exon-Intron chr7:44684895-44685117 chr7:44645296-44645518 223 nt 0.5830
hsa_OGDH_0002400 Exon-Exon chr7:44684926-44687133 chr7:44645327-44647534 283 nt 0.5477
hsa_OGDH_0002500 Exon-Exon chr7:44684926-44687358 chr7:44645327-44647759 295 nt 0.5864
hsa_OGDH_0002600 Intron-Exon-Intron chr7:44684926-44688811 chr7:44645327-44649212 1748 nt 0.5023
hsa_OGDH_0002800 Exon-Exon chr7:44684926-44695961 chr7:44645327-44656362 340 nt 0.5647
hsa_OGDH_0002700 Exon-Exon chr7:44684926-44706450 chr7:44645327-44666851 411 nt 0.5839
Showing 1 to 10 of 120 entries
Forensic Context

A study in mice demonstrated that the linear and circular RNA form of the circOGDH (LC-Ogdh) was evaluated as a reference gene for postmortem interval (PMI) estimation in liver tissue, where it was identified as the most stable candidate using geNorm and NormFinder algorithms [Tu et al. DOI:10.1007/s12024-018-9973-y]. The research, which examined RNA degradation in heart, liver, and skeletal muscle over eight days postmortem, found that LC-Ogdh showed prioritized stability in liver, ranking first among the tested genes, and was part of a tissue-specific panel of stable reference genes for normalization in RT-qPCR-based PMI estimation.