Basic Information

Symbol
circOGDH
RNA Class
circRNA
Alias
Oxoglutarate Dehydrogenase OGDC-E1 OGDH2 KGD1 E1k Thiamine Diphosphate (ThDP)-Dependent 2-Oxoglutarate Dehydrogenase Oxoglutarate (Alpha-Ketoglutarate) Dehydrogenase (Lipoamide) 2-Oxoglutarate Dehydrogenase Complex Component E1 2-Oxoglutarate Dehydrogenase, Mitochondrial Alpha-KGDH-E1 EC 1.2.4.2 OGDH-E1 HsOGDH E1o Oxoglutarate Dehydrogenase (Succinyl-Transferring) Alpha-Ketoglutarate Dehydrogenase Testicular Tissue Protein Li 131 Oxoglutarate Decarboxylase AKGDH OGDHD OGDC
Location (GRCh37)
7:44654708-44748474 UCSC Genome Browser
Location (GRCh38)
7:44615109-44708875
UCSC Genome Browser Search in Marker Scope
Host gene
OGDH
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_OGDH_0007200 Exon-Exon chr7:44721319-44741214 chr7:44681720-44701615 202 nt 0.5495
hsa_chr7_0419400 Intergenic-Intergenic chr7:44721411-44737034 chr7:44681812-44697435 37 nt 0.5676
hsa_OGDH_0007300 Intron-Intron chr7:44723839-44724041 chr7:44684240-44684442 203 nt 0.3498
hsa_chr7_0419500 Intergenic-Intergenic chr7:44728262-44728744 chr7:44688663-44689145 483 nt 0.4990
hsa_OGDH_0007800 Exon-Exon chr7:44733424-44747594 chr7:44693825-44707995 1729 nt 0.5720
hsa_OGDH_0007900 Exon-Exon chr7:44733570-44734168 chr7:44693971-44694569 180 nt 0.5667
hsa_OGDH_0008000 Exon-Exon chr7:44733586-44734168 chr7:44693987-44694569 164 nt 0.5671
hsa_OGDH_0008200 Exon-Exon chr7:44734023-44739868 chr7:44694424-44700269 103 nt 0.4466
hsa_OGDH_0008300 Exon-Exon chr7:44736028-44737381 chr7:44696429-44697782 584 nt 0.5839
hsa_chr7_0419600 Intergenic-Intergenic chr7:44736086-44736560 chr7:44696487-44696961 119 nt 0.4958
Showing 91 to 100 of 120 entries
Forensic Context

A study in mice demonstrated that the linear and circular RNA form of the circOGDH (LC-Ogdh) was evaluated as a reference gene for postmortem interval (PMI) estimation in liver tissue, where it was identified as the most stable candidate using geNorm and NormFinder algorithms [Tu et al. DOI:10.1007/s12024-018-9973-y]. The research, which examined RNA degradation in heart, liver, and skeletal muscle over eight days postmortem, found that LC-Ogdh showed prioritized stability in liver, ranking first among the tested genes, and was part of a tissue-specific panel of stable reference genes for normalization in RT-qPCR-based PMI estimation.