Basic Information

Symbol
circOGDH
RNA Class
circRNA
Alias
Oxoglutarate Dehydrogenase OGDC-E1 OGDH2 KGD1 E1k Thiamine Diphosphate (ThDP)-Dependent 2-Oxoglutarate Dehydrogenase Oxoglutarate (Alpha-Ketoglutarate) Dehydrogenase (Lipoamide) 2-Oxoglutarate Dehydrogenase Complex Component E1 2-Oxoglutarate Dehydrogenase, Mitochondrial Alpha-KGDH-E1 EC 1.2.4.2 OGDH-E1 HsOGDH E1o Oxoglutarate Dehydrogenase (Succinyl-Transferring) Alpha-Ketoglutarate Dehydrogenase Testicular Tissue Protein Li 131 Oxoglutarate Decarboxylase AKGDH OGDHD OGDC
Location (GRCh37)
7:44654708-44748474 UCSC Genome Browser
Location (GRCh38)
7:44615109-44708875
UCSC Genome Browser Search in Marker Scope
Host gene
OGDH
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_chr7_0418600 Intergenic-Intergenic chr7:44685085-44713433 chr7:44645486-44673834 81 nt 0.5185
hsa_OGDH_0003700 Exon-Exon chr7:44687043-44706450 chr7:44647444-44666851 136 nt 0.4191
hsa_OGDH_0004100 Exon-Exon chr7:44687256-44721447 chr7:44647657-44681848 232 nt 0.5560
hsa_chr7_0418700 Intergenic-Intergenic chr7:44693536-44707957 chr7:44653937-44668358 250 nt 0.3640
hsa_OGDH_0004200 Intron-Exon chr7:44694175-44715748 chr7:44654576-44676149 250 nt 0.4560
hsa_chr7_0418800 Intergenic-Intergenic chr7:44699838-44700409 chr7:44660239-44660810 572 nt 0.4161
hsa_OGDH_0004300 Intron-Exon-Intron chr7:44705456-44706450 chr7:44665857-44666851 995 nt 0.4462
hsa_OGDH_0004600 Exon-Exon chr7:44706335-44713540 chr7:44666736-44673941 271 nt 0.5646
hsa_OGDH_0004700 Exon-Exon chr7:44706335-44715748 chr7:44666736-44676149 91 nt 0.5055
hsa_OGDH_0004800 Exon-Exon chr7:44706370-44715748 chr7:44666771-44676149 180 nt 0.5556
Showing 61 to 70 of 120 entries
Forensic Context

A study in mice demonstrated that the linear and circular RNA form of the circOGDH (LC-Ogdh) was evaluated as a reference gene for postmortem interval (PMI) estimation in liver tissue, where it was identified as the most stable candidate using geNorm and NormFinder algorithms [Tu et al. DOI:10.1007/s12024-018-9973-y]. The research, which examined RNA degradation in heart, liver, and skeletal muscle over eight days postmortem, found that LC-Ogdh showed prioritized stability in liver, ranking first among the tested genes, and was part of a tissue-specific panel of stable reference genes for normalization in RT-qPCR-based PMI estimation.