Basic Information

Symbol
circOGDH
RNA Class
circRNA
Alias
Oxoglutarate Dehydrogenase OGDC-E1 OGDH2 KGD1 E1k Thiamine Diphosphate (ThDP)-Dependent 2-Oxoglutarate Dehydrogenase Oxoglutarate (Alpha-Ketoglutarate) Dehydrogenase (Lipoamide) 2-Oxoglutarate Dehydrogenase Complex Component E1 2-Oxoglutarate Dehydrogenase, Mitochondrial Alpha-KGDH-E1 EC 1.2.4.2 OGDH-E1 HsOGDH E1o Oxoglutarate Dehydrogenase (Succinyl-Transferring) Alpha-Ketoglutarate Dehydrogenase Testicular Tissue Protein Li 131 Oxoglutarate Decarboxylase AKGDH OGDHD OGDC
Location (GRCh37)
7:44654708-44748474 UCSC Genome Browser
Location (GRCh38)
7:44615109-44708875
UCSC Genome Browser Search in Marker Scope
Host gene
OGDH
Host category
mRNA
Forensic tag(s)
Postmortem interval inference
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_chr7_0418900 Intergenic-Intergenic chr7:44706390-44715670 chr7:44666791-44676071 216 nt 0.5648
hsa_chr7_0419000 Intergenic-Intergenic chr7:44706393-44715670 chr7:44666794-44676071 307 nt 0.5505
hsa_chr7_0419100 Intergenic-Intergenic chr7:44709154-44709568 chr7:44669555-44669969 415 nt 0.4578
hsa_chr7_0419200 Intergenic-Intergenic chr7:44712949-44713132 chr7:44673350-44673533 184 nt 0.5217
hsa_OGDH_0005000 Exon-Exon chr7:44713386-44714156 chr7:44673787-44674557 302 nt 0.5430
hsa_OGDH_0005100 Exon-Exon chr7:44713386-44714867 chr7:44673787-44675268 393 nt 0.5344
hsa_OGDH_0005200 Exon-Exon chr7:44713386-44715748 chr7:44673787-44676149 573 nt 0.5410
hsa_chr7_0419300 Intergenic-Intergenic chr7:44713434-44721355 chr7:44673835-44681756 217 nt 0.5484
hsa_OGDH_0005300 Intron-Exon-Intron chr7:44713922-44717191 chr7:44674323-44677592 1949 nt 0.4741
hsa_OGDH_0005400 Intron-Exon-Intron chr7:44713966-44714867 chr7:44674367-44675268 282 nt 0.5248
Showing 71 to 80 of 120 entries
Forensic Context

A study in mice demonstrated that the linear and circular RNA form of the circOGDH (LC-Ogdh) was evaluated as a reference gene for postmortem interval (PMI) estimation in liver tissue, where it was identified as the most stable candidate using geNorm and NormFinder algorithms [Tu et al. DOI:10.1007/s12024-018-9973-y]. The research, which examined RNA degradation in heart, liver, and skeletal muscle over eight days postmortem, found that LC-Ogdh showed prioritized stability in liver, ranking first among the tested genes, and was part of a tissue-specific panel of stable reference genes for normalization in RT-qPCR-based PMI estimation.