Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_RAPGEF6_0019800 Exon-Exon chr5:130843764-130857214 chr5:131508071-131521521 132 nt 0.4545
hsa_RAPGEF6_0019700 Exon-Exon chr5:130843764-130867887 chr5:131508071-131532194 550 nt 0.4491
hsa_RAPGEF6_0020000 Intron-Exon-Intron chr5:130843764-130883904 chr5:131508071-131548211 137 nt 0.4453
hsa_RAPGEF6_0020300 Exon-Exon chr5:130846007-130857214 chr5:131510314-131521521 132 nt 0.4545
hsa_RAPGEF6_0020200 Exon-Exon chr5:130846007-130883883 chr5:131510314-131548190 454 nt 0.4273
hsa_RAPGEF6_0020100 Exon-Exon chr5:130846007-130897740 chr5:131510314-131562047 524 nt 0.4198
hsa_RAPGEF6_0020900 Intron-Exon-Intron chr5:130857083-130884750 chr5:131521390-131549057 132 nt 0.4545
hsa_RAPGEF6_0020800 Intron-Exon-Intron chr5:130857083-130885920 chr5:131521390-131550227 2313 nt 0.3882
hsa_RAPGEF6_0021000 Exon-Exon chr5:130857164-130970694 chr5:131521471-131635001 517 nt 0.4159
hsa_RAPGEF6_0021100 Intron-Exon-Intron chr5:130871692-130899559 chr5:131535999-131563866 210 nt 0.3714
Showing 211 to 220 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].