Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_RAPGEF6_0022600 Intron-Intron chr5:130888448-130897090 chr5:131552755-131561397 250 nt 0.2920
hsa_chr5_0113800 Intergenic-Intergenic chr5:130894722-130894957 chr5:131559029-131559264 236 nt 0.5127
hsa_chr5_0113900 Intergenic-Intergenic chr5:130894722-130895278 chr5:131559029-131559585 557 nt 0.4291
hsa_RAPGEF6_0022700 Intron-Intron chr5:130905708-130906719 chr5:131570015-131571026 1012 nt 0.3231
hsa_RAPGEF6_0022800 Intron-Intron chr5:130906120-130907917 chr5:131570427-131572224 1798 nt 0.3882
hsa_RAPGEF6_0022900 Intron-Exon-Intron chr5:130906120-130938903 chr5:131570427-131603210 150 nt 0.4000
hsa_RAPGEF6_0023000 Intron-Exon-Intron chr5:130906120-130940386 chr5:131570427-131604693 175 nt 0.4286
hsa_RAPGEF6_0023100 Intron-Intron chr5:130913708-130913938 chr5:131578015-131578245 231 nt 0.4372
hsa_RAPGEF6_0023200 Intron-Intron chr5:130919263-130919404 chr5:131583570-131583711 139 nt 0.4101
hsa_chr5_0114000 Intergenic-Intergenic chr5:130924372-130927645 chr5:131588679-131591952 250 nt 0.3800
Showing 231 to 240 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].