Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_ABCA1_0013700

RNA Class

transcript (circRNA)

Alias

hsa_circ_0087818 hsa_circABCA1_002 hsa-ABCA1_0031

Host gene

ABCA1

Type of circRNA

Exon-Exon

Location (GRCh37)

9:107651383-107666052 UCSC (hg19)

Location (GRCh38)

9:104889102-104903771 UCSC (hg38)

External Database

circbank

circBase

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-83.00 kcal/mol

Thermodynamic ensemble

Free Energy: -86.63 kcal/mol

Frequency: 0.0028

Diversity: 53.57

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(..(((((.((((((((((((((((.((((.((((.(((.....)))))))...)))))))).)).))))))))))(((((((.((((.....))))..)))))))(((((((.((........)))))))))...((((..(((((.(((...((((((((((......))))).))))).....))).)))))))))...............)))))..).........((((.....))))...

Thermodynamic Ensemble Prediction

.....(..(((((.((((((((((((((((.((((.((((.(((.....)))))))...)))))))).)).))))))))))(((((((.((((.....))))..)))))))(((((((.((........))))))))}...((((..(((((.{{,...((((((((((......)))))},)))).....}}}.)))))))))....{{.......}}))))).,).........{(((.....)))}...

Basic Information

Secondary Structure

Structure Prediction

Forensic Context