Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_APP_0011200

RNA Class

transcript (circRNA)

Alias

hsa-APP_0110

Host gene

APP

Type of circRNA

Exon-Exon

Location (GRCh37)

21:27394262-27423368 UCSC (hg19)

Location (GRCh38)

21:26021946-26051052 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-14.70 kcal/mol

Thermodynamic ensemble

Free Energy: -18.93 kcal/mol

Frequency: 0.0010

Diversity: 30.39

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((...((((((.(.......).))))))....((((....))))..((....))...............................(((((.................)))))...((.((.(...(.....)..).)).)))))

Thermodynamic Ensemble Prediction

.....(((,..((((((.(.......).)))))}|..,((((.,..||,|..,{....,}......,|.......,,......,.......(((((....,............))))}....|..|....,{.||..,.}).))..})))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context