Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_MAP4K3_0015500

RNA Class

circRNA

Alias

hsa_circ_0054196 hsa_circMAP4K3_052 hsa-MAP4K3_0042

Host gene

MAP4K3

Type of circRNA

Exon-Exon

Location (GRCh37)

2:39513993-39515421 UCSC (hg19)

Location (GRCh38)

2:39286852-39288280 UCSC (hg38)

External Database

circbank

circBase

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-42.8 kcal/mol

Thermodynamic ensemble

Free Energy: -49.24 kcal/mol

Frequency: 0.0000

Diversity: 60.69

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((..(((((.((.(((.............))).)))))))......(((((......((.(((...))).)).((((((........))..))))..)))))...)))))..(((.(((...(.(((((..........((((......))))...(((((........))))).......))))).)))).))).(((((.(((.....))).))))).......((.(((...(((((............))))).))).)).

Thermodynamic Ensemble Prediction

.,,,.(({{,{,(((((.((.(((,,......,},..))).)))))),......{{.,,.,{(....))),{(((......)))}{{...}}..,((((((....((({{(((..,,.............,................((((......))))...(((((.,....,.))))),},....)))))))..))))))|((({.(((.....))).,)))}.,.}}|,((.{{{..,||{((............))})),)}}.}}.

Basic Information

Secondary Structure

Structure Prediction

Forensic Context