Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_SMARCC1_0018300

RNA Class

circRNA

Alias

hsa_circ_0123952 hsa_circSMARCC1_078 hsa-SMARCC1_0073

Host gene

SMARCC1

Type of circRNA

Exon-Exon

Location (GRCh37)

3:47719688-47730914 UCSC (hg19)

Location (GRCh38)

3:47678198-47689424 UCSC (hg38)

External Database

circbank

circBase

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-77.6 kcal/mol

Thermodynamic ensemble

Free Energy: -85.66 kcal/mol

Frequency: 0.0000

Diversity: 125.16

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((...))........(((((((((.(((((((((((((....((((((......)).))))((.(((((....)))))))((((((.((((((((((..(.......)..)))))))))).)))))).....(((.(.(.(((((((((((..((....))))))))))))).).)))))))))))...))))))..((((.........)))).....((((........))))((((.........))))....((((((.(((((....(((((((((((.((.....)).))).))))..)).)).....)))..)).)))))).)))))))))...

Thermodynamic Ensemble Prediction

.....({...}}........(((((((({{(((({.(((({{{....,{||||,||..,|}|||||.,.{{{||}},.})}}}||((((((.((((((((((..(.,....,}..)))))))))).))))}|{{{{{(,((({,.,,,||||||||}}||....,}))))))))}}}.}.})))))))}}},,,}}||}}..((((.........)))),,,,,|{||.......,||||{{,{.,,......}}}),,.,{{|{||,{{|||....,{||||||{||,,,...,..{,|||,|}}|{,|}.}}...,,))).}}}}})))}},)))))))))...

Basic Information

Secondary Structure

Structure Prediction

Forensic Context