Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_CD44_0003500

RNA Class

transcript (circRNA)

Alias

hsa-CD44_0067

Host gene

CD44

Type of circRNA

Intron-Exon

Location (GRCh37)

11:35218244-35231601 UCSC (hg19)

Location (GRCh38)

11:35196697-35210054 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-39.20 kcal/mol

Thermodynamic ensemble

Free Energy: -42.81 kcal/mol

Frequency: 0.0029

Diversity: 46.89

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((.......((((((....))))))......))))))...((..((((..((((.((((.((....))...))))...(((((.((.(((.(((((.(((.....(((...((.....)).(((.....)))))).....))).)))))))).)).)))))..(((((..................))))).))))..))))...))

Thermodynamic Ensemble Prediction

.....((((((.......((((((....))))))......))))))...((..((((..((((.,{{{.....,,|,...})))..{(((((.{(.(((.(((((.(((....,|{{...((.....)).(((.....)))||||...,))).)))))))).)}.)))))}.(((((.....,............))))).))))..))))...))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context