Forensic RNA Knowledge Base

Basic Information

Symbol

hsa_AFF1_0000400

RNA Class

transcript (circRNA)

Alias

hsa-AFF1_0120

Host gene

AFF1

Type of circRNA

Intron-Exon-Intron

Location (GRCh37)

4:87869650-87895223 UCSC (hg19)

Location (GRCh38)

4:86948498-86974071 UCSC (hg38)

External Database

circbank

Secondary Structure

Generated by RNAfold

Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.

Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.

Minimum free energy

-67.00 kcal/mol

Thermodynamic ensemble

Free Energy: -72.20 kcal/mol

Frequency: 0.0002

Diversity: 58.58

MFE Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((....((((((..((.((((((........((.......)).....))))))..))))))))....(((((((..........((((((...(((((.((((....(((.((((.(((....))).)))).)))..........((((((((....(((...)))..))))))))...(((((.............)))))(((((...)))))((.....))(((((......))))).............))))))))).....)))))))))))))..........((((......))))...)))

Thermodynamic Ensemble Prediction

.....(((....((((({,{((.((((((........{{.......}}.....))))))..)}))))))...,((({(((....,,,,,,|(((((,..(((((.((((....(((.((((.(((....))).)))).)))...,,,,,..((((((((....(((...)))..))))))))...(((((.............)))))(((((...))))){{.....}}(((((......))))).......,}}}}.})))))))).....})))))}})))))..,,.,....|||({{....})))...)))

Basic Information

Secondary Structure

Structure Prediction

Forensic Context