Basic Information

Symbol
hsa-mir-548j
RNA class
miRNA miRNA hairpin
Alias
MIR548J MicroRNA 548j Hsa-MiR-548j-5p Hsa-Mir-548j MIRN548J Hsa-MiR-548j-3p MIMAT0026737 MIMAT0005875 MI0006345
Location (GRCh38)
20:35453954-35454097
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Mechanical injury analysis Wound age identification
External database
HGNC NCBI Ensembl miRBase RNAcentral

Sequence & Structure

Transcript ID
hsa-mir-548j
Sequence length
112 nt
GC content
0.4464

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-54.00 kcal/mol
Thermodynamic ensemble
Free energy: -55.04 kcal/mol
Frequency: 0.1841
Diversity: 5.45
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
((((...(((((..((((..(((((((((((((((((.(((((.((((.((((......)))).)))).))))))))))))))))))))))..))))...))))).))))..
Thermodynamic Ensemble Prediction
((((...(((((..((((..((((((((((((((((,{(((((.((((.((((......)))).)))).))))))))))))))))))))))..))))...))))).))))..
Forensic Context

A study in human skin epidermal stem cells demonstrated that the mir-548j-5p was upregulated 6 hours post-burn in heat-shocked cells compared to controls [Siu et al. DOI:10.1111/wrr.13100].