Basic Information

Symbol
hsa-mir-548k
RNA class
miRNA miRNA hairpin
Alias
MIR548K MicroRNA 548k Hsa-Mir-548k Hsa-MiR-548k MIRN548K MIMAT0005882 MI0006354
Location (GRCh38)
12:57194504-57194576
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Cause of death analysis
External database
HGNC NCBI Ensembl miRBase RNAcentral

Sequence & Structure

Transcript ID
hsa-mir-548k
Sequence length
116 nt
GC content
0.3448

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-45.40 kcal/mol
Thermodynamic ensemble
Free energy: -46.81 kcal/mol
Frequency: 0.3478
Diversity: 3.25
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
..........((((((.(((((((((((.(((((((((.((((((.(((((((...........))))))).)))))).))))))))).)))))))))))))))))..........
Thermodynamic Ensemble Prediction
.......{,{(({(((,(((((((((((.(((((((((.((((((.(((((((.,......,..))))))).)))))).))))))))).))))))))))),}}})),,..}}}...
Forensic Context

A study in humans identified the mir-548k as part of a competing endogenous RNA regulatory network with a potential regulatory role in sepsis, where it was predicted to interact with the core gene IL1R2 [Zhang et al. DOI:10.1186/s12920-023-01460-8].