Basic Information

Symbol
hsa-mir-3960
RNA class
miRNA miRNA hairpin
Alias
MIR3960 MicroRNA 3960 Hsa-Mir-3960 Hsa-MiR-3960 MIMAT0019337 MI0016964
Location (GRCh38)
9:127785833-127785923
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Cause of death analysis
External database
HGNC NCBI Ensembl miRBase RNAcentral

Sequence & Structure

Transcript ID
hsa-mir-3960
Sequence length
91 nt
GC content
0.8791

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-71.30 kcal/mol
Thermodynamic ensemble
Free energy: -71.92 kcal/mol
Frequency: 0.3638
Diversity: 9.34
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(((((((((((((((((((((((((.((...((((((((((....))))))))))...))))))))).)))).)).)))..))).))))))
Thermodynamic Ensemble Prediction
((((((((({({(((((((((((((.((...((((((((((....))))))))))...))))))))).)))).)).))},.))).))))))
Forensic Context

A study in human myocardial autopsy specimens demonstrated that the mir-3960 was significantly up-regulated in septic hearts compared to non-septic controls, identified among 32 differentially expressed miRNAs with a false discovery rate < 0.05 [Lehto et al. DOI:10.1038/s41598-024-81114-6].