Basic Information

Symbol
DEFA3
RNA class
mRNA
Alias
Defensin Alpha 3 HNP-3 DEF3 Defensin, Alpha 3, Neutrophil-Specific Neutrophil Defensin 3 HP-3 HP3 Defensin 3, Neutrophil-Specific Neutrophil Peptide 3 Defensin, Alpha 3 HNP3
Location (GRCh38)
Forensic tag(s)
Tissue/body fluid identification Cause of death analysis

MANE select

Transcript ID
NM_005217.4
Sequence length
494.0 nt
GC content
0.5223

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-155.30 kcal/mol
Thermodynamic ensemble
Free energy: -165.97 kcal/mol
Frequency: 0.0000
Diversity: 130.99
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
((((.(((((.....(((...(((.((((.(.....).)))))))..)))((((((....(((......)))....)))))).(((((.((.((..(((.((.......(((((((......)))))))...))))))))))))))..........))))))))).(((((((...(((((((.(.(.((((((.(((.((((.....(((..((((..(((((.(((.(((..(.(((..(((((((...........)))))))............(((.((((....))))....))).))).)..)))))).))))).)))).)))...)))).....((((((....))))))))).)))))).).).)).)))))..((((.(((.((((((((((......)))))(((.((((((((((....))).).)))))).)))..))))).))).)))))))))))........................
Thermodynamic Ensemble Prediction
({({{(((((..,{.,(({{.(((,{{({{(,,...,,)))})}})))),||||{{..,.{{{.,,...)))....||||}}.{{(((.{(,((..,{|,((,...,.,(({((((......}))))))...)}})))}}})))}),|...,,,..)))}}}})).(((((((...(((((((.{.(.((((((.(((.((((...,,(((..((((,.{((((,(({((((..(.(((..(((((((,{....,}...)))))))...,......,.{{{.((((....))))....})}.))).)..)))))).))))),)))).))),..)))).....((((((....))))))))).)))))).),).))}}))))..{(((.(({.((((({((((......))))}(((.((((((({{{....}}}.,,)))))).)))..))))).))).)))})))))))............,|,},,.},,,.

Transcripts

ID Sequence Length GC content
GCUCCUUGCUAUAGAAGACCUGGGACAGAGGACUGCUGUCUGCCCUCUC… 494 nt 0.5223
Summary

Defensins are a family of antimicrobial and cytotoxic peptides thought to be involved in host defense. They are abundant in the granules of neutrophils and also found in the epithelia of mucosal surfaces such as those of the intestine, respiratory tract, urinary tract, and vagina. Members of the defensin family are highly similar in protein sequence and distinguished by a conserved cysteine motif. The protein encoded by this gene, defensin, alpha 3, is found in the microbicidal granules of neutrophils and likely plays a role in phagocyte-mediated host defense. Several alpha defensin genes are clustered on chromosome 8. This gene differs from defensin, alpha 1 by only one amino acid. This gene and the gene encoding defensin, alpha 1 are both subject to copy number variation. [provided by RefSeq, Oct 2014]

Forensic Context

A study in humans demonstrated that the DEFA3 gene, part of the antimicrobial peptides pathway, was upregulated in the prefrontal cortex, hippocampus, kidneys, and colon of sepsis patients [Pinheiro da Silva et al. DOI:10.1111/jcmm.17938]. In a separate forensic investigation, the DEFA3 was represented by the DEFA1B marker in a screening of candidate mRNA markers from the GTEx database for body fluid identification, though it was not selected as a final specific marker for any single fluid type [Lin et al. DOI:10.1016/j.fsigen.2025.103376].