Basic Information

Symbol
GPX1
RNA class
mRNA
Alias
Glutathione Peroxidase 1 Phospholipid-Hydroperoxide Glutathione Peroxidase GPX1 Cellular Glutathione Peroxidase Selenoprotein GPX1 EC 1.11.1.9 GSHPx-1 EC 1.11.1.12 EC 1.11.1 GSHPX1 GPx-1 GPXD
Location (GRCh38)
Forensic tag(s)
Mechanical injury analysis Wound age identification

MANE select

Transcript ID
NM_000581.4
Sequence length
899.0 nt
GC content
0.6240

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-379.50 kcal/mol
Thermodynamic ensemble
Free energy: -396.11 kcal/mol
Frequency: 0.0000
Diversity: 240.17
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
....((((((........))))))...((((((((((((((((((.(((.....))).))))))))))..))))..))))..(((((((((((((((..(((.(((.((((((((....)).)).))))...))).)))..))))))))))(((((((((((........)))))))))))(((((..(.(((..............))).)))))).....((((((.(((..(((((((((((((.((((..(((((((((.(((.(((((((...)))))))))).)).(((.(((....))).)))..)))))))..))))(((.(((..(..(((((.....).)))))..))))))(((((......((((.((.((((((...((((..........)))).....((((.((((((.((..((((((....)))))).)).))))))))))....(((..((((((((((((....(((((.(((((((((.(...((((.(........).))))...)))))....)))))))))).........(((.(((((((....))))))).)))((((((((((((((((((........)))))).))((.((((((((....(((....)))..))).....)))))...)).)))...)))))))))))).))..)))))..))).)))))))))))))))))(((((......))))).(((((((((((((((((........(((((((.(((((...........)))))))))))).........)))))).)).)))))))))))))).))))))))...........(((.(((.......))))))......((((.....))))))))))))))))))..
Thermodynamic Ensemble Prediction
....((((((........))))))...{(((((((((((((((((.(((.....))).)))))))))}..))))..}))).,(((((((((((((((..(((.(((.((({((((....)).)).})))...))).)))..))))))))))(((((((((((,......,)))))))))))(((((..(.(((..{{,...,}}...))),}}}))).....((((((.((({,(((((((((((((,,,,,..{((((,,((.(((.(((((((...)))))))))).)).,||}|(({{{{|||{|||,{|||}|||{{|,||{((.({{..,..(((({.....}.))))}..}}}}))|,,|,,.|,||||.|,|||{{|((({..,.||}},|||,,.,||,,...,.{(((.((((((.({..((((((....)))))).}).))))))}}}},.}}))))}}}|({((((((,.{{.((((({(((((((((.{...{(((.(........).)))}....))))....)))))))))),,,...,,,{((.(((((((....))))))).)))|{|,...|{.({,(((|||||....{((((((((.(((.(((..((((,...{.{.((((........)))).},..,}..)))).))))))...)))))))))})))))))),}),,,}))))),,))}})||||,.,{{..,,})),|(((((((((({(((((.,.,..{{(((((((((((({...,,....,}))))))))))))..,}.,,.,))))),.)).)))))))))))))).))))))))..|,,..,,,.(((.(((.......))))))......{(((.....))))))))))))))))))..

Transcripts

ID Sequence Length GC content
AAAAGGAGGCGCCUGCUGGCCUCCCCUUACAGUGCUUGUUCGGGGCGCU… 899 nt 0.6240
AAAAGGAGGCGCCUGCUGGCCUCCCCUUACAGUGCUUGUUCGGGGCGCU… 761 nt 0.6216
AAAAGGAGGCGCCUGCUGGCCUCCCCUUACAGUGCUUGUUCGGGGCGCU… 1040 nt 0.6106
AAAAGGAGGCGCCUGCUGGCCUCCCCUUACAGUGCUUGUUCGGGGCGCU… 918 nt 0.6231
AAAAGGAGGCGCCUGCUGGCCUCCCCUUACAGUGCUUGUUCGGGGCGCU… 1178 nt 0.6231
Summary

The protein encoded by this gene belongs to the glutathione peroxidase family, members of which catalyze the reduction of organic hydroperoxides and hydrogen peroxide (H2O2) by glutathione , and thereby protect cells against oxidative damage. Other studies indicate that H2O2 is also essential for growth-factor mediated signal transduction, mitochondrial function, and maintenance of thiol redox-balance; therefore, by limiting H2O2 accumulation, glutathione peroxidase s are also involved in modulating these processes. Several isozymes of this gene family exist in vertebrates, which vary in cellular location and substrate specificity. This isozyme is the most abundant, is ubiquitously expressed and localized in the cytoplasm, and whose preferred substrate is hydrogen peroxide. It is also a selenoprotein, containing the rare amino acid selenocysteine (Sec) at its active site. Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. This gene contains an in-frame GCG trinucleotide repeat in the coding region, and three alleles with 4, 5 or 6 repeats have been found in the human population. The allele with 4 GCG repeats has been significantly associated with breast cancer risk in premenopausal women. Alternatively spliced transcript variants have been found for this gene. Pseudogenes of this locus have been identified on chromosomes X and 21. [provided by RefSeq, Aug 2017]

Forensic Context

A study in porcine skin exposed to bromine vapor demonstrated that the GPX1 was significantly upregulated approximately 2.8-fold in both 10- and 20-minute exposure groups, identifying it as a component of the oxidative stress response and a signaling pathway element [Rogers et al. DOI:10.1002/jbt.20383]. In a rat model of mild blast traumatic brain injury, the GPX1 showed no change after a 5 psi blast but was upregulated within 2 hours and sustained after 10-11 psi exposures, and also upregulated at 72 hours after a 14-15 psi blast, indicating its role in oxidative stress pathways following vascular injury [Balaban et al. DOI:10.1016/j.jneumeth.2016.02.001].