Basic Information

Symbol
LSM2
RNA class
mRNA
Alias
LSM2 Homolog, U6 Small Nuclear RNA And MRNA Degradation Associated YBL026W C6orf28 G7b Small Nuclear Ribonuclear Protein D Homolog U6 SnRNA-Associated Sm-Like Protein LSm2 SnRNP Core Sm-Like Protein Sm-X5 Protein G7b LSM2 Homolog, U6 Small Nuclear RNA Associated (S. Cerevisiae) LSM2 U6 Small Nuclear RNA And MRNA Degradation Associated LSM2 Homolog, U6 Small Nuclear RNA Associated Chromosome 6 Open Reading Frame 28 SnRNP G7B
Location (GRCh38)
6:31797392-31806987
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
-
External database
HGNC NCBI Ensembl OMIM UniProt GTEx

MANE select

Transcript ID
NM_021177.5
Sequence length
858.0 nt
GC content
0.5420

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-308.40 kcal/mol
Thermodynamic ensemble
Free energy: -320.28 kcal/mol
Frequency: 0.0000
Diversity: 246.70
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
...............(((((((((((((.(((.((((.....)))).(((((.........)))))..((((((((((((((.((((((.(((((((..((((((.(((((...((.....))))))).))))))...((.((((.((((..(((((((((((...))))))..(((..(((((((((((.....)))).)))((((...))))...............((((...)))).))))..)))...((((((...........)))))).))))))))).)))).))(((((...)))))(((((.................))))).....(((((...(((((((((.....((((...(((....((((.....))))...)))..))))))))).)))).))))))))))))((((.(((..((.((.((((.....)))))).))...))))))).....))))))...)).))))))........))))))..((((((((((.(((.(((((........(((((((((..((((((.......((((((((((................)))))))))).......))).....)))..)))))))))......)))))..))).)))..))))))).....)))...)))(((((((((((....))))))))))).))))))))))...........((((((..(((((((((....)).....((((..((.(((((((((...(((((.....)))))....))))))))).))...))))......)))))))))))))..........((((((.((((...)))).))))))...
Thermodynamic Ensemble Prediction
...............{((,(((((((((.,,.,|||||}}}},)),.(((((.,,......})))).|||||.....{(((({(,{((({(,((((,..((((((.(((((..,(,....,)}))))).))))))...((((({{{{((,((((({.((((({...}))))).,{{{{((({.(((((((.....)))).))).|.})}.{|||{{{{{..{{{...{{||,|{{{{||||||||,,||{|},(({,{({{.{{{{,.{{{.{{((((((((.(((((,...((((.,.(((((((..((((..................|||,{{,..(((((...(((((((((.....((((...(((....((((.....))))...)))..))))))))).)))).)))))}))}}))}})),|)))),))))....,.))))).)))).)))).,},||,.{((,,(({{(((.,{,.,,.....,.},...)))))))}}||||{,{||.{,{.,||,|}}.}}}}},,,||||,|}}{{{,||}}..}}}|{((((((({,,,{,,,.........}))))))}}}.......}||.....})),.,})}))))),....,)))))}}))).)))..)))))))},...)))},.,,,(((((((((((....))))))))))),))))))))))}}}},......((((((..(((((((((...,||.....((((..((.(((((((((.,,((((({...,))))).,..}}))))))).))...)))}......))))))))))))).........}|||,||}}||......,,.)))))),..

Transcripts

ID Sequence Length GC content
NM_021177.5 NCBI
CUCCCCUCUACUCUACCCAGCUUGCGCUCCCCAGCCGCAAGUCGGCCGC… 858 nt 0.5420
Summary

This gene encodes a member of the LSm family of RNA-binding proteins. LSm proteins form stable heteromers that bind specifically to the 3'-terminal oligo(U) tract of U6 snRNA and may play a role in pre-mRNA splicing by mediating U4/U6 snRNP formation. Pseudogenes of this gene are located on the short arm of chromosomes 6 and 19. [provided by RefSeq, Nov 2011]

Forensic Context

No relevant information is available at the moment.