Basic Information

Symbol
APOM
RNA class
mRNA
Alias
Apolipoprotein M Apo-M NG20 G3a Protein G3a Alternative Name: G3a, NG20 NG20-Like Protein HSPC336 ApoM G3A
Location (GRCh38)
6:31652416-31658210
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
-
External database
HGNC NCBI Ensembl OMIM UniProt GTEx

MANE select

Transcript ID
NM_019101.3
Sequence length
761.0 nt
GC content
0.5204

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-276.40 kcal/mol
Thermodynamic ensemble
Free energy: -289.11 kcal/mol
Frequency: 0.0000
Diversity: 150.81
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
.((((((..(((((.....((((((((((((((......((((((((((((.(((.((.....(((((((((..((......))..))))))))).((((....((((((..((......)).....(((((((((....((((.(((....(((....)))..))).))))))))))))).))))))...))))(((((....))))).((((..((.((((...((((((.((((......))))(((((((((.((.((((......(((((....)))))))))...)).))))))))))))))))))).))..)))).(((((((........))))))))).))))))))))))))).(((...(((.....))).)))...(((((((((.(((.(((((.......(((....)))....)).)))))).)))))))))..(((...((((.(((....((((.....)))).....))).))))....)))))))))))))))))....)))))((((((.((.......)).))))))(((((.(((......))).))))).......(((((..(((((....((((.((....)).))))))))).)).)))((.((((((((((.((((((.(((.(((((........))))))))...)))))...).)))))))))).))...((((((((........)))))))).))))))..............................
Thermodynamic Ensemble Prediction
.((((((..(((((.,...((((((((((((((.,,...((((((((((((.(((((({{{(((((((((((..((......))..)))))))||,,{{|||,{,,,.....||,,...,{{{{...{((((((((....((((.(((....(((....)))..))).)))))))))))))}}))}||.,|||,.(((((....))))).{|||{|,,.}}}})).|||}}}}||||.....}))))))))))),,.....,,....{(.(((((....))))).))....((((((,(({...))),,...))))))(((,{(((((((........))))))),).))))))))))))))){((,...|||.....|||{|{{,,,(((((((((.(((.(((((.......(((....)))....)),}))))).))))))))).,|{|...||{|,|||,}..((((.....))))..,..}}}.||}}..,,}))))))))))))))))....))))){{{{{(,((,,.....}}.}))}))||||{.{{{,,,,..})),))||}....||.(((({..(((((,,..{(((.((....)).))))))))).)).)))((.((((((((((.{(((((.{({{(((((........)))))))),,.,})))...).)))))))))).)).,.((((((((.,,...}})))))))),))))))..,,......,,,....,,,,.........

Transcripts

ID Sequence Length GC content
NM_001256169.2 NCBI
ACUUCCGGUCUCCCCCAAACCUGCCACCGACGGCCACUUCCGUUUCCCC… 722 nt 0.5319
NM_019101.3 NCBI
AGAGUGGACUGAGCAGCCAGUAGGGGAGAGAGCAGUUAAGGCACACAGA… 761 nt 0.5204
Summary

The protein encoded by this gene is an apolipoprotein and member of the lipocalin protein family. It is found associated with high density lipoproteins and to a lesser extent with low density lipoproteins and triglyceride-rich lipoproteins. The encoded protein is secreted through the plasma membrane but remains membrane-bound, where it is involved in lipid transport. Alternate splicing results in both coding and non-coding variants of this gene. [provided by RefSeq, Jan 2012]

Forensic Context

No relevant information is available at the moment.