Basic Information

Symbol
PDZK1IP1
RNA class
mRNA
Alias
PDZK1 Interacting Protein 1 MAP17 DD96 SPAP 17 KDa Membrane-Associated Protein PDZK1-Interacting Protein 1 Epithelial Protein Up-Regulated In Carcinoma, Membrane Associated Protein 17 Membrane-Associated Protein 17 Protein DD96
Location (GRCh38)
1:47183582-47191398
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Tissue/body fluid identification
External database
HGNC NCBI Ensembl OMIM UniProt GTEx

MANE select

Transcript ID
NM_005764.4
Sequence length
838.0 nt
GC content
0.5871

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-311.40 kcal/mol
Thermodynamic ensemble
Free energy: -326.49 kcal/mol
Frequency: 0.0000
Diversity: 278.38
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(((.((((...(((((((.....(((.((((......(.((...((((((((((....(((........)))((((........)))).)))))))))).)))..)))).))).))))))).)))).)))(((((((((.(((((.(.((.....))).))))).))).))))))(((((..(((((((((((((((((((((....((.((..((((((((((((((.(((.(((((((......)))))).)........(((((((((.((((((.....((((...((..((.((((.((((..(((..((.......))...))))))))))).))..))..)))).))))))..)))).)))))....))).)))).))))))).....)))..)).))....))))(((.((((.(((.(((.(((((((.(((((((.((((....((((.((((((((((.......(((((......)))))(((....))).(((..((((.((((...........)))).)))).....)))...(.((((((........)))))))..((.(((..(((...........)))..))).))...))))))))))))))....)).)).)))))))....))))))).)))...))))))).))).((((....)))).....((.((((((.((..(.((((((..........))))))))))))))).))......(((((((((.......)))))))))..............))))..)))))))))))))((((.....((((.....)))).....))))))))).
Thermodynamic Ensemble Prediction
(((.((((...(((((((.....(((.((((......{.{{...((((((((((....(((........)))((((........)))).)))))))))).}},..)))).))).))))))).)))).)))(((((((((.(((((.(.((.....))).))))).))),,)))))(((((..,{{({((((((,,.,||||||,..,{{{,{({({({({((((({({{(((,,{(((((......)))))}.,.,{{,...{||||{{{{.|||||,}.}}}|||{}}.||,.||,|{(({,((,..{{,..,..}}},,.|||{,}|||||||||}.||,,||{.||||.||||||..}|||{|||},....|)),)}}}.|}||||}...,})))..}},|.,||,|}},(((,((({.(({.(((.(((((((.(((((((.(({(,...((((.((((((((((...,{,.(((,{.{{{,,,||||,((,.,.,,.{|{{|.{|||.{,||}....}}},,,},)),)))),.}}}||,...{.((((((........))))))}.,{{.(((..(((.,,.....}..)))..))).))...))))))))))))))....)}.)).)))))))....))))))).))),,{|}}}}}|{|||{(((({{{{|,,|}}}}}|{.{{{{,,.,|,,|}||||||,,,.}}.},,)})))})))))})}},,|{{{....||||,,{,}}},,,.}}}}}},,{{{{{{.{{,...,}},))}})),|||||||,,|(,.,))..})))))).,,)))),}}},))))))))).

Transcripts

ID Sequence Length GC content
NM_005764.4 NCBI
AGACUGAGCCCAGGUUGAUUUCAGGCGGACACCAAUAGACUCCACAGCA… 838 nt 0.5871
Summary

Located in extracellular exosome. [provided by Alliance of Genome Resources, Jul 2025]

Forensic Context

A study in human tissues demonstrated that the PDZK1IP1 was not specific when assayed via capillary electrophoresis in selection round 2 of a multiplex development for organ typing [Lindenbergh et al. DOI:10.1007/s00414-013-0895-7].