Basic Information

Symbol
RBM39
RNA class
mRNA
Alias
RNA Binding Motif Protein 39 CAPERalpha HCC1 FSAP59 CAPER RNPC2 Coactivator Of Activating Protein-1 And Estrogen Receptors Functional Spliceosome-Associated Protein 59 RNA-Binding Region (RNP1, RRM) Containing 2 Hepatocellular Carcinoma Protein 1 RNA-Binding Protein 39 Splicing Factor HCC1 CAPER Alpha CC1.3 Epididymis Secretory Sperm Binding Protein RNA-Binding Region-Containing Protein 2 RNA-Binding Motif Protein 39
Location (GRCh38)
20:35701347-35742312
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
-
External database
HGNC NCBI Ensembl OMIM UniProt GTEx

MANE select

Transcript ID
NM_184234.3
Sequence length
5060.0 nt
GC content
0.4237

Transcripts

ID Sequence Length GC content
NM_001242599.2 NCBI
AUGUGUGCUGGUGAAUGUGAGUACAGGGAAGCAGCGGCCGCCAUUUCAG… 4994 nt 0.4235
NM_001242600.2 NCBI
AUGUGUGCUGGUGAAUGUGAGUACAGGGAAGCAGCGGCCGCCAUUUCAG… 4976 nt 0.4242
NM_001323422.2 NCBI
AUGUGUGCUGGUGAAUGUGAGUACAGGGAAGCAGCGGCCGCCAUUUCAG… 4964 nt 0.4226
NM_001323423.2 NCBI
AUGUGUGCUGGUGAAUGUGAGUACAGGGAAGCAGCGGCCGCCAUUUCAG… 5205 nt 0.4238
NM_001323424.2 NCBI
AUGUGUGCUGGUGAAUGUGAGUACAGGGAAGCAGCGGCCGCCAUUUCAG… 5057 nt 0.4236
NM_004902.4 NCBI
AUGUGUGCUGGUGAAUGUGAGUACAGGGAAGCAGCGGCCGCCAUUUCAG… 5042 nt 0.4244
NM_184234.3 NCBI
AUGUGUGCUGGUGAAUGUGAGUACAGGGAAGCAGCGGCCGCCAUUUCAG… 5060 nt 0.4237
Summary

This gene encodes a member of the U2AF65 family of proteins. The encoded protein is found in the nucleus, where it co-localizes with core spliceosomal proteins. It has been shown to play a role in both steroid hormone receptor-mediated transcription and alternative splicing, and it is also a transcriptional coregulator of the viral oncoprotein v-Rel. Multiple transcript variants have been observed for this gene. A related pseudogene has been identified on chromosome X. [provided by RefSeq, Aug 2011]

Forensic Context

No relevant information is available at the moment.