Basic Information

Symbol
SEMA6D
RNA class
mRNA
Alias
Semaphorin 6D KIAA1479 Sema Domain, Transmembrane Domain (TM), And Cytoplasmic Domain, (Semaphorin) 6D Semaphorin-6D FLJ11598
Location (GRCh38)
Forensic tag(s)
Postmortem interval inference

MANE select

Transcript ID
NM_001358351.3
Sequence length
5907.0 nt
GC content
0.4227

Transcripts

ID Sequence Length GC content
GCAGACGGCGGAGUAACCGGUGGAAGUGUCAAAGAGGAAGGAGUGGAGG… 6040 nt 0.4384
GUCCCGCUGCUGCUGCUGCUGCUGCAAGGGGUGGUGGCGAGUUUCAGGA… 5907 nt 0.4227
GUCCCGCUGCUGCUGCUGCUGCUGCAAGGGGUGGUGGCGAGUUUCAGGA… 5939 nt 0.4228
AGAGCCAGCUCGGCGUCCCCCGCACAUAGCUGGGGUUAGCAGGGGUUGC… 6308 nt 0.4564
AGAGCCAGCUCGGCGUCCCCCGCACAUAGCUGGGGUUAGCAGGGGUUGC… 2698 nt 0.5093
AGAGCCAGCUCGGCGUCCCCCGCACAUAGCUGGGGUUAGCAGGGGUUGC… 6269 nt 0.4565
AGAGCCAGCUCGGCGUCCCCCGCACAUAGCUGGGGUUAGCAGGGGUUGC… 6326 nt 0.4557
AGAGCCAGCUCGGCGUCCCCCGCACAUAGCUGGGGUUAGCAGGGGUUGC… 6494 nt 0.4544
GCGGCCGCUUCCCACCGUCCCUCUCCCCUUACUGGCAGAGCGCGCUGCG… 5919 nt 0.4367
Summary

Semaphorins are a large family, including both secreted and membrane associated proteins, many of which have been implicated as inhibitors or chemorepellents in axon pathfinding, fasciculation and branching, and target selection. All semaphorins possess a semaphorin (Sema) domain and a PSI domain (found in plexins, semaphorins and integrins) in the N-terminal extracellular portion. Additional sequence motifs C-terminal to the semaphorin domain allow classification into distinct subfamilies. Results demonstrate that transmembrane semaphorins, like the secreted ones, can act as repulsive axon guidance cues. This gene encodes a class 6 vertebrate transmembrane semaphorin that demonstrates alternative splicing. Several transcript variants have been identified and expression of the distinct encoded isoforms is thought to be regulated in a tissue- and development-dependent manner. [provided by RefSeq, Nov 2010]

Forensic Context

A study in zebrafish and mouse demonstrated that the SEMA6D transcript, a semaphorin involved in retinal development, increased in relative abundance within 0.5 hours postmortem in mouse brain and liver tissues [Pozhitkov et al. DOI:10.1098/rsob.160267].