Basic Information

Symbol
SLIRP
RNA class
mRNA
Alias
SRA Stem-Loop Interacting RNA Binding Protein C14orf156 DC50 SRA Stem-Loop-Interacting RNA-Binding Protein, Mitochondrial Chromosome 14 Open Reading Frame 156 PD04872
Location (GRCh38)
14:77708045-77761104
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
-
External database
HGNC NCBI Ensembl OMIM UniProt GTEx

MANE select

Transcript ID
NM_031210.6
Sequence length
376.0 nt
GC content
0.4495

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-102.60 kcal/mol
Thermodynamic ensemble
Free energy: -110.72 kcal/mol
Frequency: 0.0000
Diversity: 100.53
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(((((.((((.((((.((.(((((.(....).))))).))))))(((..(((((.....((((((.(..((((((((((((...........((((.((....)))))).....((((....))))((.(((((...((.((((((((((((.....)))))))))))).)).))))))))))))))))))).).)))))).....(((((((...(((...((((((.....(.(((((......((...))......))).)).)....))))))...))).....)))))))....))))))))...((((....))))...........)))).)))))...............(((((...))))).....
Thermodynamic Ensemble Prediction
{((((.((({.{(({{((.(((((.(....).))))).)))))}(({,.{{{{{.....,(((((.{..((((((((((((.,......,,,({((.((,,..}}}}}}.,},}{{{|....}}},((.(((({,..((.((((((((((((.....)))))))))))).)).))))))))))))))))))).}.)))))|{{{,.,,,{(((({.,,,)}}}}}}}}}.},}|,|.,,.......,...,{{......,,|||({{{{...{{||}.{{({{......}},})))...)))))}}}...{(((....)))).........,,)))).)))))..,,...........{(({{...})))).....

Transcripts

ID Sequence Length GC content
NM_001267863.1 NCBI
GGGGCCGCGACCUCGGCUCGAGAAGGUGCUUUAGUCUGAAGAUGGCGGC… 414 nt 0.4517
NM_001267864.1 NCBI
GGGGCCGCGACCUCGGCUCGAGAAGGUGCUUUAGUCUGAAGAUGGCGGC… 436 nt 0.4450
NM_031210.6 NCBI
AGUCUGAAGAUGGCGGCCUCAGCAGCGAGAGGUGCUGCGGCGCUGCGUA… 376 nt 0.4495
Summary

Steroid receptor RNA activator (SRA, or SRA1; MIM 603819) is a complex RNA molecule containing multiple stable stem-loop structures that functions in coactivation of nuclear receptors. SLIRP interacts with stem-loop structure-7 of SRA (STR7) and modulates nuclear receptor transactivation (Hatchell et al., 2006 [PubMed 16762838]).[supplied by OMIM, Mar 2008]

Forensic Context

No relevant information is available at the moment.