Basic Information

Symbol
SLIT2
RNA class
mRNA
Alias
Slit Guidance Ligand 2 Slit-2 SLIL3 Slit Homolog 2 Protein Slit (Drosophila) Homolog 2 Slit Homolog 2 (Drosophila)
Location (GRCh38)
Forensic tag(s)
Other applications

MANE select

Transcript ID
NM_004787.4
Sequence length
8053.0 nt
GC content
0.4873

Transcripts

ID Sequence Length GC content
ACUUGGUGUUAUUUAUUUGGGAAGCGCCCGGACGGCGGAGCUUGGCGGC… 8041 nt 0.4876
ACUUGGUGUUAUUUAUUUGGGAAGCGCCCGGACGGCGGAGCUUGGCGGC… 8029 nt 0.4877
ACUUGGUGUUAUUUAUUUGGGAAGCGCCCGGACGGCGGAGCUUGGCGGC… 8053 nt 0.4873
Summary

This gene encodes a member of the slit family of secreted glycoproteins, which are ligands for the Robo family of immunoglobulin receptors. Slit proteins play highly conserved roles in axon guidance and neuronal migration and may also have functions during other cell migration processes including leukocyte migration. Members of the slit family are characterized by an N-terminal signal peptide, four leucine-rich repeats, nine epidermal growth factor repeats, and a C-terminal cysteine knot. Proteolytic processing of this protein gives rise to an N-terminal fragment that contains the four leucine-rich repeats and five epidermal growth factor repeats and a C-terminal fragment that contains four epidermal growth factor repeats and the cysteine knot. Both full length and cleaved proteins are secreted extracellularly and can function in axon repulsion as well as other specific processes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]

Forensic Context

A study in mice demonstrated that the SLIT2 transcript is upregulated in the hippocampus following postnatal stress and the combination of prenatal ethanol and postnatal stress, with beta values of 4.77 and 5.88, respectively [Alberry et al. DOI:10.1186/S11689-020-09316-3]. A separate topographic transcriptomic analysis in mice identified the SLIT2 transcript as having enhanced expression in the nucleus accumbens shell, where it was implicated in axonal guidance pathways [Crofton et al. DOI:10.1016/J.Neuropharm.2020.108398].