Basic Information

Symbol
SPECC1
RNA class
mRNA
Alias
Sperm Antigen With Calponin Homology And Coiled-Coil Domains 1 HCMOGT-1 CYTSB NSP Cytokinesis And Spindle Organization B Nuclear Structure Protein 5 Sperm Antigen HCMOGT-1 Cytospin-B FLJ36955 NSP5 Sperm Antigen With Calponin-Like And Coiled Coil Domains 1 Structure Protein NSP5a3a Structure Protein NSP5a3b Structure Protein NSP5b3a Structure Protein NSP5b3b Sperm Antigen HCMOGT 1 Cytospin B HCMOGT1
Location (GRCh38)
17:20008865-20319026
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
-
External database
HGNC NCBI Ensembl OMIM UniProt GTEx

MANE select

Transcript ID
NM_001243439.2
Sequence length
8255.0 nt
GC content
0.4972

Transcripts

ID Sequence Length GC content
NM_001033553.3 NCBI
AGAAGCAGAAAAGGUUGGAUAAAAGAUAAGGACAGACCCACGAAGUCAA… 8219 nt 0.4942
NM_001033554.3 NCBI
CCUUUCUUUGACUGGAGCGGACCCGCCGGACGCAACCGCCUCGCCAGCC… 4804 nt 0.4455
NM_001033555.3 NCBI
CCUUUCUUUGACUGGAGCGGACCCGCCGGACGCAACCGCCUCGCCAGCC… 8050 nt 0.4943
NM_001243438.2 NCBI
CCUUUCUUUGACUGGAGCGGACCCGCCGGACGCAACCGCCUCGCCAGCC… 4813 nt 0.4457
NM_001243439.2 NCBI
GAGCAUCAGUGAGCGCCCGGAGCCGUGGCCGCUGGGGGUUGCGGCGGCG… 8255 nt 0.4972
NM_001386077.2 NCBI
CCUUUCUUUGACUGGAGCGGACCCGCCGGACGCAACCGCCUCGCCAGCC… 6470 nt 0.5032
NM_001386078.2 NCBI
GAGCAUCAGUGAGCGCCCGGAGCCGUGGCCGCUGGGGGUUGCGGCGGCG… 6889 nt 0.5091
NM_001386079.1 NCBI
GAGCAUCAGUGAGCGCCCGGAGCCGUGGCCGCUGGGGGUUGCGGCGGCG… 5134 nt 0.4548
NM_001386080.1 NCBI
GAGCAUCAGUGAGCGCCCGGAGCCGUGGCCGCUGGGGGUUGCGGCGGCG… 4086 nt 0.5127
NM_001386081.1 NCBI
GAGCAUCAGUGAGCGCCCGGAGCCGUGGCCGCUGGGGGUUGCGGCGGCG… 4271 nt 0.4790
Showing 1 to 10 of 15 entries
Summary

The protein encoded by this gene belongs to the cytospin-A family. It is localized in the nucleus, and highly expressed in testis and some cancer cell lines. A chromosomal translocation involving this gene and platelet-derived growth factor receptor, beta gene (PDGFRB) may be a cause of juvenile myelomonocytic leukemia. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Aug 2011]

Forensic Context

No relevant information is available at the moment.