Basic Information

Symbol
SSR4
RNA class
mRNA
Alias
Signal Sequence Receptor Subunit 4 TRAPD Translocon-Associated Protein Subunit Delta Signal Sequence Receptor, Delta TRAP-Delta SSR-Delta Signal Sequence Receptor Subunit Delta Translocon-Associated Protein Delta CDG1Y
Location (GRCh38)
X:153793516-153798505
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
-
External database
HGNC NCBI Ensembl OMIM UniProt GTEx

MANE select

Transcript ID
NM_006280.3
Sequence length
608.0 nt
GC content
0.5905

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-231.80 kcal/mol
Thermodynamic ensemble
Free energy: -241.71 kcal/mol
Frequency: 0.0000
Diversity: 154.66
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
.(((..((((...((((((...(((((((..((((.......((((....))))))))..)))))))..))))))..((((((..(((((..((((...((((..(((((....(((.((((.......((..((((...((((((((((((((((((......))))..)))))))......))))).)).))))..))((((.((...(((...((((((((((((.(((.((((.....))))))).).(((((((...(..((((((((((..((..((((((........))).)))..)))))))).))))..).))).))))((..((((((((...))))))))..))(((((((...)).)))))((((((......(((((....))).))......))))))......)))))))))))))))).))))....)))).)))..)))))..))))...))))..)))))))))))...((((..(((......)))..))))....((((.....).)))..(((((((((((((((((......)))..))))).....................)))).)))))..))))..))).
Thermodynamic Ensemble Prediction
.{((..((((.{.((((((..,(((((((..(((,......{((((....))))))))..)))))))..)))))).,((((((.,(((((,,((((...((((..(((((....{((.((((.......{{..{(((|.,((((((((((((((((((,....,}))}..))))))),.....})))).)}.})}}.,)}||||}|,..|{||,.,((((((((((({.(((.((({.....})))))).}.((({((({{.{..((((((((((,.,{..((((((........)))}}))..}))))))).))))}}}.}}}.})))((..((((((((...))))))))..))(((((((...)),}))))((((((......(((((....))).))......))))))......))))))))))}|}}}|,)}||.,..)))}.)))..))))).,))))...)))),,))))))))))|...((((..(({......}))..)))),,,.{{{{,.,,.))))}.|(((((((((((((((((......)))..))))).....................)))).)))))}.))))..))).

Transcripts

ID Sequence Length GC content
NM_001204526.1 NCBI
GAUUCACGCCCCCUUCCGGCGCCUAGAGCACCGCUGCCGCCAUGUUGAG… 754 nt 0.6141
NM_001204527.2 NCBI
AAUCGGACUCCAGACUGCUUCGGGUGCGGCUACCCCACCGCUCCCCUGC… 778 nt 0.6157
NM_006280.3 NCBI
CUCUAGGCAGAGAAGAGGCGAUGGCGGCGAUGGCAUCUCUCGGCGCCCU… 608 nt 0.5905
Summary

This gene encodes the delta subunit of the translocon-associated protein complex which is involved in translocating proteins across the endoplasmic reticulum membrane. The encoded protein is located in the Xq28 region and is arranged in a compact head-to-head manner with the isocitrate dehydrogenase 3 (NAD+) gamma gene and both genes are driven by a CpG-embedded bidirectional promoter. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Mar 2011]

Forensic Context

No relevant information is available at the moment.