Basic Information

Symbol
C1orf54
RNA class
mRNA
Alias
Chromosome 1 Open Reading Frame 54 Uncharacterized Protein C1orf54 FLJ23221
Location (GRCh38)
1:150268034-150281735
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
-
External database
HGNC NCBI Ensembl UniProt GTEx

MANE select

Transcript ID
NM_024579.4
Sequence length
509.0 nt
GC content
0.4322

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-134.00 kcal/mol
Thermodynamic ensemble
Free energy: -144.13 kcal/mol
Frequency: 0.0000
Diversity: 74.80
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
.((((((.(((....)))...(((((...))))).(((((((...((((.(((((.((((((...(((((((.(..........).))))))).....(((((((....(((((...))))).(((((.((..........))))))))))))))............))))))....((((..(((.((((((.((((((((.((((((.((.((.((.((((..(((..(((((.(..((((.......(((((((....)))))))((.((.((((((.((((.(..........(((.((((......)))).)))..(((......))).).)))).))).))).)).))...))))..).)))))..)))......)))))))).)))))))))))))))).))).)))..))).......))))))))).))))((((.(((((((.....)))))))))))))))))).........................))))))...
Thermodynamic Ensemble Prediction
.((((((.(((....)))...(((({...})))).(((((((...((((.(((({.((((((...(((((((.(..........).))))))).....(((((((....(((({...,}})).(((({.{{.,....,,,.})))))))))))))............))))))..,{((((,{{((.((((((.((((((((.((((((.((.((.(,{((((..(((..(((((....,,,,.{{....(((((((....))))))){{.((.((((((.((((...,,.,.....(((.((((......)))).)))..||{......}}}.}.)))).))).))).)).}}..,})))....)))))..)))......)))))))).)))))))))))))))).))).)))..)}).,..,,.))))))))).))))((((.(((((((.....))))))))))))))))))..,,.....................)))))}...

Transcripts

ID Sequence Length GC content
NM_001301039.1 NCBI
CUCCAGACAGACAGAAGAAAGGGAUUCUUUUCAGUCUAGAAAAAUGCUC… 641 nt 0.4384
NM_001301040.1 NCBI
CUCCAGACAGACAGAAGAAAGGGAUUCUUUUCAGUCUAGAAAAAUGCUC… 638 nt 0.4373
NM_001301041.1 NCBI
CAAUAGUGCAGAAUCCAGAAUGGAUGUCCUCUUUGUAGCCAUCUUUGCU… 443 nt 0.4244
NM_001301042.1 NCBI
CAAUAGUGCAGAAUCCAGAAUGGAUGUCCUCUUUGUAGCCAUCUUUGCU… 425 nt 0.3976
NM_024579.4 NCBI
CUUUCACAGCAAUAGUGCAGAAUCCAGAAUGGAUGUCCUCUUUGUAGCC… 509 nt 0.4322
Summary

Predicted to act upstream of or within epithelial cell proliferation involved in renal tubule morphogenesis; phosphatidylinositol 3-kinase/protein kinase B signal transduction; and response to wounding. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Jul 2025]

Forensic Context

No relevant information is available at the moment.