Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_RAPGEF6_0013700 Exon-Exon chr5:130815206-130846184 chr5:131479513-131510491 1454 nt 0.3934
hsa_RAPGEF6_0014100 Exon-Exon chr5:130815206-130857214 chr5:131479513-131521521 138 nt 0.4420
hsa_RAPGEF6_0014200 Intron-Exon chr5:130815206-130867855 chr5:131479513-131532162 62 nt 0.4677
hsa_RAPGEF6_0014300 Intron-Exon-Intron chr5:130815206-130867887 chr5:131479513-131532194 94 nt 0.4574
hsa_RAPGEF6_0013400 Exon-Exon chr5:130815206-130897740 chr5:131479513-131562047 1800 nt 0.3956
hsa_RAPGEF6_0013500 Intron-Exon-Intron chr5:130815206-130899640 chr5:131479513-131563947 250 nt 0.2800
hsa_RAPGEF6_0014400 Exon-Exon chr5:130815306-130834211 chr5:131479613-131498518 280 nt 0.4429
hsa_RAPGEF6_0014500 Intron-Intron chr5:130818301-130819533 chr5:131482608-131483840 1233 nt 0.3666
hsa_RAPGEF6_0014600 Intron-Intron chr5:130818965-130821636 chr5:131483272-131485943 2672 nt 0.3978
hsa_RAPGEF6_0014700 Intron-Intron chr5:130819348-130819533 chr5:131483655-131483840 186 nt 0.3441
Showing 161 to 170 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].