Basic Information

Symbol
circRAPGEF6
RNA Class
circRNA
Alias
Rap Guanine Nucleotide Exchange Factor 6 RA-GEF-2 PDZ-GEF2 PDZGEF2 PDZ Domain Containing Guanine Nucleotide Exchange Factor (GEF) 2 PDZ Domain-Containing Guanine Nucleotide Exchange Factor 2 Rap Guanine Nucleotide Exchange Factor (GEF) 6 PDZ Domain-Containing Guanine Nucleotide Exchange Factor I KIA001LB RAGEF2
Location (GRCh37)
5:130759766-130970853 UCSC Genome Browser
Location (GRCh38)
5:131424073-131635160
UCSC Genome Browser Search in Marker Scope
Host gene
RAPGEF6
Host category
mRNA
Forensic tag(s)
Drug abuse diagnoses
External database
circbank

Transcripts

ID Type Location (GRCh37) Location (GRCh38) Length GC content
hsa_RAPGEF6_0016000 Exon-Exon chr5:130825239-130928159 chr5:131489546-131592466 115 nt 0.3043
hsa_RAPGEF6_0015600 Exon-Exon chr5:130825239-130940386 chr5:131489546-131604693 1771 nt 0.4009
hsa_RAPGEF6_0016500 Exon-Exon chr5:130828275-130857207 chr5:131492582-131521514 1149 nt 0.4186
hsa_RAPGEF6_0016600 Exon-Exon chr5:130828275-130857214 chr5:131492582-131521521 132 nt 0.4545
hsa_RAPGEF6_0016300 Exon-Exon chr5:130828275-130867887 chr5:131492582-131532194 1250 nt 0.4224
hsa_RAPGEF6_0016400 Intron-Exon-Intron chr5:130828275-130868356 chr5:131492582-131532663 1719 nt 0.4078
hsa_RAPGEF6_0016200 Exon-Exon chr5:130828275-130897740 chr5:131492582-131562047 1450 nt 0.4090
hsa_RAPGEF6_0016900 Exon-Exon chr5:130831246-130840471 chr5:131495553-131504778 108 nt 0.3241
hsa_RAPGEF6_0017000 Exon-Exon chr5:130831246-130841215 chr5:131495553-131505522 108 nt 0.3241
hsa_RAPGEF6_0017100 Exon-Exon chr5:130831246-130843900 chr5:131495553-131508207 137 nt 0.4453
Showing 181 to 190 of 253 entries
Forensic Context

A study in mice demonstrated that the circRAPGEF6 was differentially expressed in methamphetamine-treated primary cortical neurons, with RNA sequencing indicating up-regulation, though qRT-PCR validation showed an opposite expression pattern [Li et al. DOI:10.1016/J.Neulet.2019.02.032].