Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0002900

Sequence Length

335 nt

GC Content

0.4448

GUGCUUCAGGUGCCAGCUGUUAAUUUGCACCCCAUCAGGAAGAAGGGACAAACAAAAGACCCUGCACUGAAUACAAGUUUACCUCAGAAAGUUUUAGGAACAACUGAAGAAAUAAGUGGUAAGAAGCAUACAGAAGACACUAUUUCUGUGGCGUCAUCUUUACAUUCUAGUCCUCCUGCAUCUCCUCAAGGCUCCCCUCACAAAGGUUACACACUUAUUCCAUCAGCUAAAUCUGACAACUUGUCUGACUCCAGCCAUAGUGAGAUUUCUUCACGGUCCAGCAUCGUGAGCAAUUGUUCUGUUGACUCCAUGUCUGCAGCUCUACAGGAUGAACG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-71.60 kcal/mol

Ensemble Metrics

Free Energy: -78.30

Frequency: 0.0000

Diversity: 85.38

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((...(((((.............)))))...((((.....((((.(........).))))...)))).............(((((((((((((((.....((((.(.((((((((((((((.((.(((((((........))))))))).))...................(((...........)))....(((.....))))))).)))))))).).)))).....))))).))))).))))).....(((...(((((.....))))))))..)))))(((......((((.((((.(((.....))).))))....)))).....)))

Thermodynamic Ensemble Prediction

(((((,,.(((((.{{.......,||)))}|,,.(({{...,.((((.{........).)))),,,))))...,..{{,,...(((((((((((((((.....((((.(.((((((((((((((.((.((((((({......|))))))))).)).,,,.........,{.{,,..,,..........})),,..{{{.....)))}))).)))))))).).)))).....))))).))))).))))}.....{{{...(((({.....}})))|||..}))))(({,,,...{{({.((((.(((.....))).))))..,.}}))}.},,)))