Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0003500

Sequence Length

250 nt

GC Content

0.3600

GCUACGGAGAGUGAGGUAGGAGAUGUAGAUUUGACACGUCUUCCAGAAGGACCUGUUGAUUCUGAGGAUGACGAAGAGGAAGAUGAAGAGAUUGAUCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAAAUAAGUGGUAAGAAGCAUACAGAAGACACUAUUUCUGUGGCGUCAUCUUUACAUUCUAGUCCUCCUGCAUCUCCUCAAGGCUCCCCUCACAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-52.10 kcal/mol

Ensemble Metrics

Free Energy: -54.78

Frequency: 0.0128

Diversity: 37.48

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((.((((...(.(((((((((((..((((((.(((((.....))))).))))))....((((((...(((...((((((((.((......)).........................................................................((.(((((((........))))))))).))))))))...)))..))))))))))))))))))...)))).))........

Thermodynamic Ensemble Prediction

.....((.((((...(.(((((((((((..((((((.(((((.....})))).)))))}.,,,((((((...(((...((((((((.((......)).........................................................................((.(((((((,......}))))))))).))))))))...)))..))))))))))))))))))...)))),)}........