Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0003600

Sequence Length

250 nt

GC Content

0.4000

GGUUUUUGUCCUGUCGCCCAGGCUGGAGUGCAGUUGUGCAGUCAUAGCUAACAGCAGCUUUGAACUCCUGGGCUCAGUUGAUCCUCCCACCUCAGCCUCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGAAAUAAGUGGUAAGAAGCAUACAGAAGACACUAUUUCUGUGGCGUCAUCUUUACAUUCUAGUCCUCCUGCAUCUCCUCAAGGCUCCCCUCACAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.50 kcal/mol

Ensemble Metrics

Free Energy: -47.24

Frequency: 0.0005

Diversity: 39.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((.((((.....))))..(((((((((..(.(((((((.((((......)))).)).)))...(((((.((.((.......)).)).))))).............................................................((((..((((.((.(((((((........)))))))))....))))..))))...)).)..))))).)))).)))))...))((.....))

Thermodynamic Ensemble Prediction

((.,,,,(.((((.....}})),.(((((((((..{.{{(((((.((((......)))).))}.}}...(((((.((.((.......)).)).)))))....................................................,,.{{....{(((..((((.((.(((((((,......,)))))))}}.,..))))..))))...,)},,,))))).)))).}}})),..)){{.....))