Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0008600

Sequence Length

336 nt

GC Content

0.3839

UGGCUUGAACCUGGCAUCUGUAGCAAGACUCAGAGGAACUUGGGAAAAGUUACCAAGCAAAUACGAGAAACAUCUUCAAGAUCUACAAGACAUUUUUGAUCCAUCUAGAAACAUGGCAAAGUAUAGAAAUAUUCUUAGUAGUCAAAGUAUGCAGCCUCCAAUUAUUCCACUCUUCCCUGUUGUCAAGAAAGAUAUGACAUUUCUACAUGAAGGAAAUGACUCCAAAGUAGAUGGUUUAGUAAACUUUGAGAAGUUAAGAAUGAUUUCCAAGGAAAUCCGCCAAGUUGUUCGAAUGACUUCUGCUAACAUGGACCCAGCUAUGAUGUUUCGACAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-62.40 kcal/mol

Ensemble Metrics

Free Energy: -69.13

Frequency: 0.0000

Diversity: 115.76

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((..(((...(((...(((((((..((((...((((((((((.........)))))...((((......(((.(((.((((...(((((...)))))....)))).)))..))).....)))).......)))))...))))...)).)))))...))).)))..)))((((........(((..((((.((....(((((((.......)))))))....((((((..((......))..))))))((((((((.(((((((((....((....))...)))))))))...)))))))).....(((((......))))))).)))))))))))

Thermodynamic Ensemble Prediction

(((((.{..{{{((,.,{{(((({{,({,{{{{{(,(((((((.....,{,.,,,}},..,,,,,,,,..,,|}|{{.{(((,..{{{{{...}}))).,,.||}}.},,..}}}|....}},}.,,...((((((({,..(((((((.((({(((.,....,.....,.,,,,...,,.{(({{.,..,,...,}}||,{((({{.....|||,.,,..},}..,))})}.))},..))).)))))))..,.})))))))((((({....)})})),.))))))),)))...)))}})})))},.}|.}}..},)))))(..(({....)))..)