Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0010700

Sequence Length

350 nt

GC Content

0.3800

AUAUCCCUGAUCAAGUUAUAAGAGUUUUCAAAGUGGAUCAGCAAAGUUGCUACAUUAUCAUCAGUAAAGACACCACAGCUAAAGAAGUAGUUUUUCAUGCUGUUCAUGAAUUUGGUUUGACCGGUGCAUCCGACACAUAUUCUCUCUGUGAAGUUUCUGUUACUCCUGAGGGUGUCAUAAAACAGAGAAGACUUCCAGAUCAGUUCUCCAAAUUAGCUGAUAGAAUUCAACUCAAUGGAAGGUAUUACUUAAAAAAUAACAUGGAAACAGAAACCUUAUGUUCAGAUGAAGAUGCUCAAGAACUAGUUAAGGAAAGCCAGCUAUCCAUGCUGCAGCUCAGUACCAUUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-60.50 kcal/mol

Ensemble Metrics

Free Energy: -69.12

Frequency: 0.0000

Diversity: 130.38

Structure Visualization

Structure Prediction

MFE Structure Prediction

..........((((.......(((((..((..((((((.(((...(((..(((..........)))..))).((..(((((.......((((((((((.(((..(((((....(((((...(((.....)))............((((.((((((((((((((.((....)).)).....))))))...)))))))))).......((((....((.(((......))).))...))))((((...))))...........((....)).))))))))))..)))))))))).))).......)))))..)).......)))))))))..)).))))).......)))).

Thermodynamic Ensemble Prediction

...,,,,({{{{.{,{{....{{{{{,,{,..{{{|||,(((,..,,|}}|,{..........||,..},,...{((((...,{({,...}}}}},..))))}.,,|{{{{,{(({,,,,.{{(.....)}).,.,....,,..{(((.(((((((((((((({(,...})),}}.....}))))),..)))))))))|{{{(({.........})))))}.,...,},.{{{{{||||{{,,....}}}.........,.{{,...,,.,.,|||||}||||.,,|||.,,.,})}}.})))}.},},,)}..,{|{(((.......)))),.}}||,||.,}))))))