Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0015200

Sequence Length

313 nt

GC Content

0.4121

AAGAUGAAUGGUCAUCUCCGGUUAUUGAAUAUUGCCUGUGCUGCAAAGGCUAAGUGGAGACAGGUUGUGCUGCAAAAGGCUUCCCGCGAGUCCCCUCUACAAUUCAGCCUUAAUGGAGGGAGUGAGAAGGGAUUUGGUAUUUUUGUUGAAGGAGUAGAACCUGGUAGCAAAGCUGCUGAUUCAGGACUGAAACGUGGUGAUCAGAUUAUGGAAGUAAAUGGACAAAACUUUGAGAAUAUUACAUUUAUGAAAGCCGUUGAAAUUUUGAGGAAUAAUACUCAUCUUGCACUUACUGUGAAGACCAACAUUUUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.90 kcal/mol

Ensemble Metrics

Free Energy: -80.90

Frequency: 0.0003

Diversity: 51.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((..(((((.((((((.(((.........((((.........))))))).))))))((((((.((((.(....(((......((((((((.(((.((.(((..((.....))..))).))))).))))))))........)))...).)))).))))))(((((...)))))((((.((..((......))..))))))....((((..(((((((.....................))))))).....))))........((((........)))).....(((.....)))..))))).)))))...

Thermodynamic Ensemble Prediction

.{((((..(((((.((((((.(((.........((((.,,...,,.))))))).))))))((((((.((((.(..,,({{......((((((((.(((.((.(((..((.....))..))).))))).))))))))........))}...).)))).))))))(((((...))))){{,{(((..,{,,,..||||,|,}}}},.,,{(((..(((((((..........,..........))))))).....)))}........((((........))))...,.(((.....)))..))))).))))}...