Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0017800

Sequence Length

290 nt

GC Content

0.4276

AACAAUUGCUGGAGUUUAUGCACCAGCUCCCUGCAUUUGCAAACAUGACCAUGUCUGUAAGGAGAGAACUCUGCUCAGUGAUGAUUUUUGAAGUGGUAGAGCAGGCUGGAGCUAUUAUUCUUGAAGAUGGGCAAGAGUUUGUCUGCAUAGCCCAGCAAGAUUAUUGGAGAAUUUUAAACCAUGUGGAAAAAAAUACCCAUAAAGUUGAGGAAGAGGGAGAAAUUGUUAUGGUACAUGAGCAUCGGGAACUAGACCGGAGUGGAACCAGGAAAGGACACAUUGUGAUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-64.50 kcal/mol

Ensemble Metrics

Free Energy: -70.32

Frequency: 0.0001

Diversity: 85.01

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((.((((.(((((((.((((.((((((...((((((.((((....)))).)))))).......((((((.((.(............).))))))))...(((((.((((.......((.((((((((....)))))))).)))))))))))((((((.......)))))).(((..(((((..........)))))..))).......)))))).........)))).))))))).)))).))((.((.((.((((...((......))...)))).)).)).))

Thermodynamic Ensemble Prediction

.....((.((((.(((((((.((({.((((((.,.,(((((.((((....)))).)))))|.,,....{{((((((,.,.,,.,,,,.,.,}|}|}},)))|,,(((((.(((({......{{.{{{{{{{|..,,)))))))).}))))))))))....,,..,,,...,{{{{.,{(,.{((((..........)))))..})),.},...)))))).........}))).))))))).)))).}}({.((.((.((((...((......))...)))).)).)).))