Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0021500

Sequence Length

298 nt

GC Content

0.3993

UUCAGAAACGAUUGCCAGAUGUUGGUAUAUCCUACUUUCUGGAUCUGUGCUUGUGAAAGGCUCCAUGGUCUUGCCUCCUUGCAGUUUUGGUAAGCAGUUUGGAGGAAAAAGAGGAUGUGAUUGUCUUGUAUUAGAGCCUUCAGAAAUGAUUGUGGUAGAGAAUGCCAAAGAUAAUGAAGAUAGUAUUCUACAAAGAGAAAUUCCUGCCAGACAAUCCCGAAGAAGAUUUCGGAAAAUUAACUAUAAAGGAGAGCGCCAAACCAUUACUGAUGAUGUGGAGGUUAACAGCUAUCUUUCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-68.10 kcal/mol

Ensemble Metrics

Free Energy: -73.55

Frequency: 0.0001

Diversity: 89.88

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((.((((((((.....))))).)))....))))))))((((.((((....((((((((((..((((.(((((..((.((((....)))).))..)))))...))))..))).))..)))))......))))...))))...(((((((((((.((((............(((.......)))...........)))))))))..))))))(((((......))))).............(((((.(((....((((.((((.......)))).))))....))).)))))..

Thermodynamic Ensemble Prediction

(((({(({,({{,{((((,.,|}||},.,,)}.,,,})))))},,,|,|.||.||||(((((({{{..{{{{.(((((..((.((((....)))).))..)))))...}|}|,{||}.||,|})))}.,,...}}})|||)},}...(((((((((((.((((,,,........|{|{|,.....}))|.......,..}))))))))}.})))))(((((,....,))))).............{((((.(((....((((.((((.......)))).))))....))).))))),,