Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RAPGEF6_0021900

Sequence Length

250 nt

GC Content

0.3080

GAAUAAGAAAAAAAUGAGAAACCUAUGAAGGAGACUUAGAUGGAGCAGAUGGACCCAAAAUAACAAAAAGUAAAAACUGAAAAAAAGCAGCCGCCGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAUUCCUGCCAGACAAUCCCGAAGAAGAUUUCGGAAAAUUAACUAUAAAGGAGAGCGCCAAACCAUUACUGAUGAUGUGGAGGUUAACAGCUAUCUUUCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-23.73 kcal/mol

Ensemble Metrics

Free Energy: -27.61

Frequency: 0.0018

Diversity: 28.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((.....((((...(((....)))...))))..(((..(.....)..)))...................(((........))).....((((........................................................)))).........(((((......)))))...............(((.(((....((((.((((.......)))).))))....))).)))))))

Thermodynamic Ensemble Prediction

.....((({.....{(((...(((....)))...)))}..{((..(.....}..))}...........,{{....,||,.......,|,}..,,.((({........................................................))))..,......(((((,....,)))))..............||({.(((....((((.((((.......)))).))))....))).)))))))