Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_RIMS2_0012800

Sequence Length

581 nt

GC Content

0.4165

CUGGUAUCAUCUUGUGAGAAUCUCCUUUGCAAAUCCUCUUUAUUCCACUGUUCUUUUUCUUUCCCUUGCUCGUGUAUAUCUUGUGUUUUUUCCUCGUCUCCUGAUUCUCUGUUUUUCUCCUUAUUACACGUUUUGGCAAUCUCUUUCCCUUUCUCAUUCUCAUUAAUUCUUUCUUCCUUUACCUCUUCCUUCUCAUGAACUAUCUCUUCAUGCUUAUCCCCUUCUUUCCCUCCCUCUUCUAUUCCCUUUGGUCUUCAAGCCAAGCAUUGCUCCUGAAUCUCGAGGUACACUUCCAUCUUUUAGACGCUUAUUUAAUAAAAUGCGACCAAUUAAACGAUCUCCAUCUUUAGAUGGUUGCCAGGUUACAGGGUGCUUAUCACUAUGGCUAUGCUCCUCGUUAAGGGUUGUGCUACUACACGUAUCUACCCCAGAGUCCUUAAUCUGAGGUUCAGACCAUUCCAAAUCCUCUUCCAAAGAGUGGCCACCAAAGUACAUCAUUUCCUUUUGUCUCUCAGACCUGGUGUUAGAGUCCGACAAAACUGCCUGCUCACUAGUUUUUCUUUUUCCCUUUUGACUGUCCC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-84.30 kcal/mol

Ensemble Metrics

Free Energy: -93.90

Frequency: 0.0000

Diversity: 144.01

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((.......((((((((.......(((.................)))..............(((((((((((......(............(((....)))...........).......))))))....)))))................))))))))..............................((((((.......)))))).................................(((((((......(((((((...))).(((((((((((((..((...((((.....((.(((((...((((.....(((((((.(((((.(((....)))))))).)))))))...))))..))))))).......))))...))..)))))....((((.((((........))))..))))((((........)))))))))))).............(((((...))))))))).)))))))............(((((((.(((.(((.....))).)))...))))))).)))).....((.((((................))))))...

Thermodynamic Ensemble Prediction

(((((({{{{{{.((((((({.......{,,..................,...............{((((((((((......{.,..........(((....)))...........}.......))))))....))))}................}}}}}}},................,,,,,,........((((((.......))))))..................................,(((((......|}}}|{{...}},.,{|||...,||||,,.....{,,,....,||.(((,..,.,.,,.....|||{{{{.,{{{{.({{....}))}}}))})))))))})){..{{{{|{|{{|,......,|||,,.||,.|||||...{((({,((({.....,,.}},|,.|||,((((........)))),))}.,}},|,..........{{{{,...,}))))))},},,,}}},,,..........,,{(((,,,,,|||{{{{{|,|,|||,..}}}}}}},}},},}..,}}}}|,,................}}))))..)